Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02058 ATGGGGAGAGCACCTTGCTGTGACAAAGCAAACGTAAAGAAAGGTCCTTGGTCGCCAGAAGAAGATGCCAAACTCAAATCATACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAGAAGATTGGCCTTAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTTAACTACCTCCGCCCTAACATCAAGCACGGTGGTTTCTCTGAAGAAGAAGATAACATCATTTGTAGCCTCTACATTAGCATTGGAAGCAGGTGGTCGGTGATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGACTGAAGAAGAAGCTTCTAGGGAAGCACCGTAAGGAACTGCAGGCACGTAACAAAGGAAACGGTGTCGTTAAGCAGGAGAACAACTCCTCACTCTTGCTTCAGGAAAACAGTGTTCAACAACAGCCTTGTTGGCCACAGATTCCTGCGCTGCCACTTTCACCGTACACATGCCAAACTCCAAGTTTCAACGACCAAGACTCTATAAGAAAACTTCTAATCAAGCTTGGAGGGAGATTCTCCGGTGATTATCAACCCATCCTTGATGGGTTGAATCTTCAGTTTCCACACGGCTCTCTCTCATCAACACAACAAATTCAAGAGGAGCAAGTTCATGTTAGCTCTTCTGGGTGCATGAACTCTATTGGCAACAACCAAGTACAATTTGGTCAGAGTAATGAGTACTGTTCTGAGTTGGTGCAAGGACAAGTGAGTTTCACTTCCGCAGCTATTGGGGAAATGGATTCTACTAATGATTATTCTCAAAGGTTATTAGGAGGGTTGGAGTTCTTCTATGGAGAGGAAATTATTACCGATAAGATAATGGGTGCTTCTGCATCTTCAGGTTGTGGGCAAGGTACTAATTGGGTTGAGACAAGTCCTTTGATGTATCCTCCTCTTGTTACTTCGAACTTCGAGAGTGTGAGGCAAGAGATGCCACGAGAAAATGCTTTTCAAGAGTTGAGCTACCCAGGGGCGCAATAG 1038 0.4547 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNGVVKQENNSSLLLQENSVQQQPCWPQIPALPLSPYTCQTPSFNDQDSIRKLLIKLGGRFSGDYQPILDGLNLQFPHGSLSSTQQIQEEQVHVSSSGCMNSIGNNQVQFGQSNEYCSELVQGQVSFTSAAIGEMDSTNDYSQRLLGGLEFFYGEEIITDKIMGASASSGCGQGTNWVETSPLMYPPLVTSNFESVRQEMPRENAFQELSYPGAQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02058 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu9g02058 345 Gene3D - 7 68 - -
Lapu9g02058 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lapu9g02058 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu9g02058 345 CDD SANT 71 113 IPR001005 -
Lapu9g02058 345 Gene3D - 70 144 - -
Lapu9g02058 345 CDD SANT 16 62 IPR001005 -
Lapu9g02058 345 PANTHER OS09G0431300 PROTEIN 1 260 - -
Lapu9g02058 345 FunFam Transcription factor RAX3 70 146 - -
Lapu9g02058 345 FunFam Transcription factor RAX3 7 68 - -
Lapu9g02058 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lapu9g02058 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lapu9g02058 345 SMART sant 67 115 IPR001005 -
Lapu9g02058 345 SMART sant 13 64 IPR001005 -
Lapu9g02058 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lapu9g02058 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02058 Lapu-Chr9 35332962 35334435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02058 1 186 MYB Transcription Factor Family AT3G49690 67.164 3.45e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g02058 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02058 K09422 - gmx:100790407 608.216