Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02056 ATGGTCTTTGATATCTCTAACCCAGGGCTTCGACTTGGTCTTGCTCTTGGCCTCCAAGATCAGTCACAAGAAACTTGCATGAAGAGCCATGAACAAAGGCAAAGACAAAGACAAAACCAGAGAAAAAAGGAAGCGGATCCACGTAACAAGGCTTACCCATCACTTAGGTTAGGACCACCCCATGATGAGGCAAATAGTAGTCGCCAAATTACAAAGATGGAGTCCGATGAATATTTTAATTTTCACCCTCATGTTTCTCCTCCAAGTGCAGTGTCTTCGTTTTCTAACTCATCAAGCATCATCAAAAGAGAGAGAGATCAGTTCGCGGGCGAAGCACTTGATCAGTTAGAGGTAGAGAAGTTTCCCTCAAACTTAAAAGTTGTGGATCTTGATGAATATGGTTACTCCAAGAAGAAGCTTAGGCTCACCAAAGAACAATCTACAGTTCTGGAAGATAGCTTCAAAGAGCATTCTACTCTCACTCCGGCACAGAAGCAAGAATTGGCGAAGAAACTGAATCTGCGGGCAAGACAAGTGGAGGTATGGTTTCAGAACAGGAGAGCCAGGACAAAACTGAAACAAACGGAAGTGGACTGTGAGTTACTGAAAAAGTGCTGCGAAAGTCTAACAGAGGAGAACAAGATGCTGCAAAAAGAGTTGGAAGAGCTTAAATCGGTGAAAACAGCACTTCAGGGACCCATTTTTATGCAGCTTCCAGTGGCAACCCTTACAATATGCCCTTCCTGTGAGAGAATTTGCAGTGGCAGCGGTTCCACCACCACCAATGGCTCCTCTCTCGTCGCCGCCGCCACCACCACCACCACCATGCTTATGGGCCCAAAGCCCCATCATGATCACCGCTTCTATAAAAATAACTATACATTCACAAAATCATCTGCAGCTTGCTAG 909 0.4521 MVFDISNPGLRLGLALGLQDQSQETCMKSHEQRQRQRQNQRKKEADPRNKAYPSLRLGPPHDEANSSRQITKMESDEYFNFHPHVSPPSAVSSFSNSSSIIKRERDQFAGEALDQLEVEKFPSNLKVVDLDEYGYSKKKLRLTKEQSTVLEDSFKEHSTLTPAQKQELAKKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCESLTEENKMLQKELEELKSVKTALQGPIFMQLPVATLTICPSCERICSGSGSTTTNGSSLVAAATTTTTMLMGPKPHHDHRFYKNNYTFTKSSAAC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02056 302 MobiDBLite consensus disorder prediction 26 50 - -
Lapu9g02056 302 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Lapu9g02056 302 Gene3D - 132 198 - -
Lapu9g02056 302 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Lapu9g02056 302 CDD homeodomain 137 194 IPR001356 GO:0003677
Lapu9g02056 302 MobiDBLite consensus disorder prediction 23 67 - -
Lapu9g02056 302 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Lapu9g02056 302 Pfam Homeobox associated leucine zipper 193 226 IPR003106 GO:0006355|GO:0043565
Lapu9g02056 302 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Lapu9g02056 302 SMART HOX_1 136 197 IPR001356 GO:0003677
Lapu9g02056 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 269 - -
Lapu9g02056 302 SUPERFAMILY Homeodomain-like 137 201 IPR009057 -
Lapu9g02056 302 Coils Coil 192 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02056 Lapu-Chr9 35297284 35301504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02056 131 302 Homeobox Transcription Factor Family AT4G37790 59.538 1.77e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu9g02056 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02056 K09338 - gmx:100790927 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02056 9 35297284 35301504 Lapu9g02056 9 35297284 35301504 ECH