Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02054 ATGATACCAAACCTTCAAATACCCCTCTGGGACTCCGCCTCCGCCGCCTCAGACGGAGGACCACTCTCCCCATTCTCTCCCAATGCACCCGACACTGCCTCATTCTCCACCGATCATTTCCGGATGTTCCAGTTCAAGGTGCTCGCCTGTCCACGTGGCAGGTCCCACGACTGGACCGAGTGTCCCTACGCTCACCCCGCCGAGAAGGCTCGCCGCCGGGACCCCCGCAAGTTCCTCTACTCCTCCACGGCCTGCCCTGATTACCGGAGGGGGAACTGCAAGAGGGGTGACACGTGTCAGTTCGCGCATGGCGTCTTCGAGTGCTGGCTCCACCCTTCTCGCTACAGAACCCACCTCTGTAAAGACGGAACTAATTGCCGCCGCAGAGTTTGCTTCTTCGCTCACACCAGCGACCAGCTCCGCCTCGTACCCGAATCATCCTCTCTTTCCTCTCCCACTTCTGTTATCAACCCTTCCTTCTCCGATTCTCCACCCTCTTCTCCTTACTTACACAACATACAAGAGATAGTCAGCTCAATGCGAAATGTTAAGCTGGAGGATGGGCTTTATTCGGGTTTGACCCGGTGCGTGTTCGGGTCGCCATGTGGCGGTATTTTAAGTGCTAATGGCTGTGAGGAAGAAGAGCCTCCTATGGAGAGAGTGGAATCTGGGAGAGATATTAGGGCCAGAATCTACGCCAAGCTAAGTAGAGAGAATTCGATTGCAGGTTGTGCTCCTGACATTGGATGGTTCTCGGAACCGGTGAAAGGGTTCGGTGGCCTTTGA 786 0.556 MIPNLQIPLWDSASAASDGGPLSPFSPNAPDTASFSTDHFRMFQFKVLACPRGRSHDWTECPYAHPAEKARRRDPRKFLYSSTACPDYRRGNCKRGDTCQFAHGVFECWLHPSRYRTHLCKDGTNCRRRVCFFAHTSDQLRLVPESSSLSSPTSVINPSFSDSPPSSPYLHNIQEIVSSMRNVKLEDGLYSGLTRCVFGSPCGGILSANGCEEEEPPMERVESGRDIRARIYAKLSRENSIAGCAPDIGWFSEPVKGFGGL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02054 261 ProSiteProfiles Zinc finger C3H1-type profile. 79 106 IPR000571 GO:0046872
Lapu9g02054 261 SUPERFAMILY CCCH zinc finger 78 108 IPR036855 GO:0046872
Lapu9g02054 261 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 104 IPR000571 GO:0046872
Lapu9g02054 261 Gene3D - 79 142 - -
Lapu9g02054 261 PANTHER UNKEMPT FAMILY MEMBER 26 255 IPR045234 -
Lapu9g02054 261 SMART c3hfinal6 114 137 IPR000571 GO:0046872
Lapu9g02054 261 SMART c3hfinal6 79 105 IPR000571 GO:0046872
Lapu9g02054 261 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02054 Lapu-Chr9 35286226 35287011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02054 24 148 C2H2 Transcription Factor Family AT5G12850 62.500 7.17e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu9g02054 zf-CCCH 5.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02054 - K23048 gmx:100786368 369.777