Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02039 ATGGAGAGAGATATGTACATTGCTCCACTGGACATTTCTGGTCGAGGTGCTACAGTAATAGATGAAATTTCCCAACATTCCACCTCAAATCCTCTCATCCAGTGCCATTCACTTGACCTTAATAACCAATCCCGTATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTATAAGTAATGTCCATGCTGATACTTGCTTCATTAATCCATCAATTATTGCTGACTCTAGTCCATTAGTTACATCACAAAGAAAGACTAGTGTGGGAGATGCCTCAAATCCCATGGAGAACACTGAGTTTCAAGAGCATTTAGTTGGTGGAGTGCCACTCACTCCTGCTTCGCTTGCTGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTGGAGAATTCAGCAGCCCTGCCTCCCTCAATCTGCACCACGGGGGCACTAGAGGTATTCTTCAACAATTTGCAAGGTACTTCAAACCCATTGTCTGGAACTTTTGAGGATTGTGGTTACAATGAAGTTCCTAGTAAGTGGAATGCTAACAAATTTCATAAAGCTCCTGTGATTGATGGAACTTCTCAGCCTTATTCTTCTATAGCAAACCTGGATCCAAATGAATGGGCAACATCAAACGTTGCGAACATGGCCAATTATGCTTACTATTCCGCTAACCTTAGTAAGGAACTTTCCCTGAGTCTTGCAACTTCTATAACCGCAGGAGAGTGCTCAGAGGTTACTTGCTCTAATATGACCCCATGCTTGAATGGAACCATTTCCTGCAGCACTAGTAGGGAACTTTCTATGAATTTGGGTGGTAATAAATATGTACAGTTTTCACCAGAAGTACTGGAATCTGGATACCTTGTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTGAAAATCTGGAACAATTAAATTATTCAGCACCTGGTAATAGAGCAGGTGGAAACAAATCAGCTTCAGCTTTTCCACCCAAAAGAAATATCTTGACAGACCACAATACAAATTCTATTTACGTATCTCATGCAGAGTCTCCATTGCAAAGGCGGGCTGCTGAATCAAAGAAAGCCCAACTGCTGGCTCTTCTACAACTGGTGGACAATCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCCGCTACCGAGCTGGACCCACAAATACACGCACATTTTGCTCTTCAAACCATCTGTGTCCTTTACAAGGACTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGTTTCAACAAATCGTGCGCGGAAGATAATGAATGGTCTGTTGAAACTTCATTTCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCAGAAAGATCTGTCTCGGTTCTACGGGCCTGGATGTTTCAGAATTTCCTACACCCGTATCCCAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACTAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTCCGGCTGTGGAAACCTATGATTGAAGAAATGTATGCTGAAATGAACAAAAGAAAGGCTTGTCGAAATGAAGAAGGAATCCAGAATAACCATGGAAACAGGATAAGCATGAGAAATCAAAGGTTTAATGTTAACTAA 1686 0.4187 MERDMYIAPLDISGRGATVIDEISQHSTSNPLIQCHSLDLNNQSRIINGISMLSGEQGEPISNVHADTCFINPSIIADSSPLVTSQRKTSVGDASNPMENTEFQEHLVGGVPLTPASLAAILAARIGLEENLENSAALPPSICTTGALEVFFNNLQGTSNPLSGTFEDCGYNEVPSKWNANKFHKAPVIDGTSQPYSSIANLDPNEWATSNVANMANYAYYSANLSKELSLSLATSITAGECSEVTCSNMTPCLNGTISCSTSRELSMNLGGNKYVQFSPEVLESGYLVGIQEILAQIARYSFENLEQLNYSAPGNRAGGNKSASAFPPKRNILTDHNTNSIYVSHAESPLQRRAAESKKAQLLALLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTICVLYKDLRERISNYILAMGSSFNKSCAEDNEWSVETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGIQNNHGNRISMRNQRFNVN* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02039 561 ProSiteProfiles 'Homeobox' domain profile. 459 522 IPR001356 GO:0003677
Lapu9g02039 561 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 211 540 - -
Lapu9g02039 561 SMART HOX_1 462 526 IPR001356 GO:0003677
Lapu9g02039 561 Gene3D - 465 545 - -
Lapu9g02039 561 CDD homeodomain 462 523 IPR001356 GO:0003677
Lapu9g02039 561 Pfam Homeobox KN domain 479 518 IPR008422 GO:0003677|GO:0006355
Lapu9g02039 561 Pfam Associated with HOX 282 419 IPR006563 -
Lapu9g02039 561 SUPERFAMILY Homeodomain-like 464 531 IPR009057 -
Lapu9g02039 561 SMART prehox3 276 420 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02039 Lapu-Chr9 35161938 35165451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02039 228 546 Homeobox Transcription Factor Family AT4G32980 55.418 2.26e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu9g02039 POX 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02039 - - gmx:100820354 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02039 9 35161938 35165451 Lapu9g02039 9 35161938 35165451 ECH
Lapu8g00774 8 25797928 25802107 Lapu9g02039 9 35161938 35165451 PCT