Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02008 ATGGACGCAGCCGGAGCAACTCCCTACAATCCCCGTTCCGTCCACGAAGTCTTCAGAGATTTCAAGGGCCGCAGAGCCGCCATTGTTAAGGCCCTCACCACCGATGTTGAATTGTTCTATCAGCAGTGTGATCCAGAGAAGGAAAATCTTTGTCTTTATGGATTTCCTAACGAGCATTGGGAAGTCAATCTGCCTGCTGAGGAAGTTCCTCCAGAGCTTCCAGAACCAGCATTAGGCATTAACTTTGCTAGAGACGGGATGGAAGAAAAGGACTGGCTATCCTTGGTTGCTGTACACAGTGATACATGGTTAATTTCTGTGGCTATGTATTTTGGTGCAAGATTTGGATTTGATAAGGCTGATAGGAAGAGTCTTTTTAGTATGATAAATGATCTTCCAACAATATACGAGGTTGTTGCAGGGAAGGGCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATCATGACAATAACAAATCTAAATCAAACTCCAAGAGAGGTTCTGAATCACAAGAAAAGTATTCAAAATCAATGGAATCAAAGGATGAGGGTGCTTTGGAAAAGGACGATGAAGAGCATGGAGAGACACTCTGTGGGGCATGTGGAGAGAACTATGCTGTTGATGCTGATGAGTTCTGGATTTGCTGTGACATTTGTGAGAGGTGGTTTCATGGGAAATGTGTGAGGATTACCCCTGCGAAGGCTGAGAATATCAAGCATTACAAATGTCCATCTTGCAGCAACAAGAAAGCTCGTCAATTGTAG 768 0.4349 MDAAGATPYNPRSVHEVFRDFKGRRAAIVKALTTDVELFYQQCDPEKENLCLYGFPNEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDTWLISVAMYFGARFGFDKADRKSLFSMINDLPTIYEVVAGKGKKQGKEKSSVSNHDNNKSKSNSKRGSESQEKYSKSMESKDEGALEKDDEEHGETLCGACGENYAVDADEFWICCDICERWFHGKCVRITPAKAENIKHYKCPSCSNKKARQL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02008 255 CDD PHD_AL_plant 198 250 IPR044104 -
Lapu9g02008 255 Pfam PHD-finger 199 250 IPR019787 -
Lapu9g02008 255 SUPERFAMILY FYVE/PHD zinc finger 188 252 IPR011011 -
Lapu9g02008 255 SMART PHD_3 198 248 IPR001965 -
Lapu9g02008 255 ProSitePatterns Zinc finger PHD-type signature. 199 247 IPR019786 -
Lapu9g02008 255 MobiDBLite consensus disorder prediction 146 189 - -
Lapu9g02008 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 249 IPR013083 -
Lapu9g02008 255 ProSiteProfiles Zinc finger PHD-type profile. 196 250 IPR019787 -
Lapu9g02008 255 FunFam PHD finger alfin-like protein 191 249 - -
Lapu9g02008 255 PANTHER CPG BINDING PROTEIN 10 254 IPR045104 GO:0006355|GO:0042393
Lapu9g02008 255 Pfam Alfin 14 140 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02008 Lapu-Chr9 34908152 34911616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02008 4 253 Alfin-like Transcription Factor Family AT3G42790 70.916 5.23e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lapu9g02008 Alfin 4.6e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02008 K26274 - pop:7476667 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02008 9 34908152 34911616 Lapu9g02008 9 34908152 34911616 ECH