Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02001 ATGGATGTTAATTATATGAAGCAAGGTCTGCAAGGCGGCGAAGTGAGCATGGCTGAGAAGAAAAGGGAAGTGACGGTGGCGATTCCTAATGAGGGTGGTGGTGAATCTTTGACGCCAAAGCAGCAGAGCAGGGGGAATTCGCCACACGGAATGTTAAACGACAACGAGTTTGCTGCAAAGTCGTCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAGGGTCCCAATTCCAACGCCAATCTCACCCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAGCAACCTTACCCTGTCGATGGGACCCTTTTGGAAGAGAATGGTACCTCAACTTTGCAAGAAAATTTGAATGTTGGTTCACCATATAAAGCATCGCCTATTAACAATAAACCTGGAACTGTTAACAGAACAGTCTCCATCCTTTCTGTGATCACTCCCAAGACGCCGTTGATGGCGTCTCCTGGGCCGGCTGGCGGGGAGGATTTCGATGAAATCATTTATCGAAAAGTTGAATTTAGTAAAAGCAAGCGTAGTAGGAGAGTGACAGCTAAGGTTTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGTTTGGTGGCTAGTTTAACAGTTGGAAAACTTAAAAGGACAGAGATTTGGGGTTTGGGGATTTGGAGGTGGTGTGTGCTTGTAATGGTGACCTTTTGTGGCATGTTGGTTACCAGATGGTTCATGCGCATTATTGTTTTCTTTATTGAGACCAACTTTTTATTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGTGGGGTGCACCGATCTGAATTGGCCACAAAGATTTTGAATGGGGTAACGTGGACTCTGGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCATGAAGACATTGTTGCTGAAGATTTTGGCGTCAAATTTTCATGTTAAATCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTTCAGACTCTCTCTGGGCCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGCTCAGTGTTGGTCACTTTAGTTTCAGGAGTACAGATGGTAAGGGTGGAATGAAGAAAGAGACTATCGATATTGCAAAGCTTCACCAGATGAAACAAGAGAAGGTTTCTGCGTGGACTATGAAGGTCTTGGTAGATGCAATGACAAATTCAGGGCTGTCCACAATATCTAGTGCACTAGATGAAAGTTTTGATGATGGAGAAAATGAACAGTCTGATAAAGAGATTACTAATGAGATGGAAGCTACTGCTGCAGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTACGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAGATTACCAGGAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAGGAACGCAAAGCATTGGCACATGCCTTAAGCGACACCAAAACTGCTGTGATACAACTAAACAAGCTCGTGACAGTAATCCTAATAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCAACGACAAAAGTACTTGTATTTCTCTCGTCCCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACTTGTAAGAACATATTTGAAGCTATCATCTTCGTGTTTGTGATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGATGGGGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAATTCTGTCTTGGCCATGAAACCGATTAGCAATTATTACAGAAGCCCCGATATGGGTGACCGTGTAGAGTTCTCGATTGATTTTACAACACCAGCTGAGAAAATTGGGGCACTGAGAGAAAAAGTAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCACCCTAATCATGGCTTAGTAGTGAAGGACATTGAAGATGTAAACAGGATTAAGATGGGTATATACGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGAGAAGAACTGAATTGGTGATGGAAATAAAGAAAATATTTGAAGAACTCAACATCAGATACAACCTTCTTCCACAAGCCATTCATCTCAGACATATGGAGCCAGACCCTAGGGTGCTCAATACATGA 2322 0.4285 MDVNYMKQGLQGGEVSMAEKKREVTVAIPNEGGGESLTPKQQSRGNSPHGMLNDNEFAAKSSPLNCASPEIRFMPSPNKPPKGPNSNANLTRRKSLTRSVYSKPKSRFGEQPYPVDGTLLEENGTSTLQENLNVGSPYKASPINNKPGTVNRTVSILSVITPKTPLMASPGPAGGEDFDEIIYRKVEFSKSKRSRRVTAKVLFEWFVFVCIASSLVASLTVGKLKRTEIWGLGIWRWCVLVMVTFCGMLVTRWFMRIIVFFIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVHRSELATKILNGVTWTLVSLLIGAFLWFMKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASLSVGHFSFRSTDGKGGMKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTNSGLSTISSALDESFDDGENEQSDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERKALAHALSDTKTAVIQLNKLVTVILIVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAMKPISNYYRSPDMGDRVEFSIDFTTPAEKIGALREKVKRYLERNPQYWHPNHGLVVKDIEDVNRIKMGIYVTHTMNFQEFGEKNKRRTELVMEIKKIFEELNIRYNLLPQAIHLRHMEPDPRVLNT* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02001 773 MobiDBLite consensus disorder prediction 83 104 - -
Lapu9g02001 773 MobiDBLite consensus disorder prediction 35 50 - -
Lapu9g02001 773 Pfam Mechanosensitive ion channel 545 751 IPR006685 GO:0016020|GO:0055085
Lapu9g02001 773 FunFam Predicted mechanosensitive ion channel 605 654 - -
Lapu9g02001 773 Gene3D - 605 654 IPR023408 -
Lapu9g02001 773 SUPERFAMILY Sm-like ribonucleoproteins 595 654 IPR010920 -
Lapu9g02001 773 MobiDBLite consensus disorder prediction 1 115 - -
Lapu9g02001 773 PIRSF Memb_At2g17000 12 772 IPR016688 -
Lapu9g02001 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 66 767 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02001 Lapu-Chr9 34863523 34868342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02001 68 761 Mechanosensitive Ion Channel Family AT5G12080 60.029 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02001 K22048 - gmx:100803107 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02001 9 34863523 34868342 Lapu9g02001 9 34863523 34868342 ECH