Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01979 ATGAATTTCAACAATGATTCATCAAACCATGAACAGAATCAAAGTAAAAAACGAAAGCAACCCGATGCTGATCATTCTCCATCCCTGGAATTGCCTAATTCAAGCATGAACCCCAGAAGGTATCAGGTAGAGGTGTTTGAAGTTGCATGGAGAAGGAATACAATAGCAGTGTTGGATACAGGCTCTGGTAAGACCTTGATTGCTGTGATGCTTATGAAAGAGGTTGGTCAAACCATCAAGACTAGGGGAGTGAAGAAGCTGATTGTGTTCTTGGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAATAATATAAAATATCTGACAAGTTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGAAGGAGATTAGTAACAATGATGTATTGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGGGCAACAGGCAACCATCCCTATACAAAAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTACTACGGATTGTGAGGATCAGATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGACAGAGATGGATAGATATATCCTGTCTGCTCAAGAGAGTTGTAGATATTATGACCAAGCACGATTTTCTGCTTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTTCAAGTTTGATGCATTGTTATCAGAAAATACAAGTAACTATATGGATGTGGAAAATAAATTTAAGATGCTGTCTCAGCGGATGTCCAATGAACTTGGAAAAATTTTACATTGTCTTGAAGATCTTGGAATCCTGTGTGCTTATGAGGCAGTTAAAATCTGTCGTGAGAATTTCTCCAAAACTGAAGGAATGTGTGAAATTTACAGAACAGGTTATCTTCAGTGTATAAGTTTTGTTGAAGAAGTAATAAAATTAATTGAAGAATCCCTCCACTGTGGTGATAAAAAGATTTTGGGGGTTGATTTTGATAATTCGAAGGCAGAAGAAATGGGATACATATCTCCAAAATTACTTGAACTTATTAAAATTTTCCAATCACTTGGGGAATCTAGTCAGGTATTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCAGATTTCTCATTTCACTGTTTCCTATTTAACTGGAAATAATACATCGGTTGATGCTGTCGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTTCGCTCTGGAAAGGTCAATCTATTGTTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAGTCAACTCTTCAACATTATTCGGAGTGAGCGCTCCATGAGTGATGCATCTATAAATAAGGACCATGAATCTAGTTTAAGGGTATTTACAATGGGGAAAATAGATGCATATTATGTGGAATCTACCGGAGCTTCTGTAACTTTAGATTCTAGTGTTAATCTTATCCACCGATACTGTGGAACACTTCCACGAGATCAGTACTCTTGTGCAAAACCCAGTTATGTGTTTCTGCCTGTGGAAGAGGGTTACCAATGTAAATTAACATTACCATCTAATTCAGCTTTCCAGACAATAATTGGTCCATCAGGAAAAGATGTTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCCTTAAATGAACATTTGGTTCCATTCATTGAAGATCTTTCAGAAGATGACCATATTGTAAAAAATAAAGAATCAAGTTTGGGGGCAGGAACCACAAAAAGAAAGGAGTTACATGGAACAACCAACATTCATGCATTAAGTGGTGCATGGGGAGACAAACATGATGATGCAGCCAGATTTTTTGCCTATAAAATTGAATTCACATGTAGTATTGTTAGCGAAATATACTCTGGATTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATCTGAGAAATATAGAATTAGATCTTTATTTAGTCTCAAAGATCGTTAAAGCTTCTGTCTCTTCTTGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGATTGGTGTTTAGGTCAAAGTCAGCAGGAGGAGAAAGAGAATTTTTACTTCAAAAAGACACAAAATCATTGTGGAGAGTAAAACACTTATATTTGCTTCTACCACTGGAGAAATTGAATGGTATCTGTGAGGGAGCCTTGCAAATTAATTGGCATGGAATCAATTCTTGTGCATCTGCTATTGAATTCTTAAGGAGGAAATTTTCTTTGGTCACTGGAGATTGTGATGATAACAGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATGGAATGTGTCGGAACAAACAAGATTCAGTTTGCTAACTGTGTTGTTGATGCTGACAATGTAAAAGGCATATTAGTTTTGGCCGTTCACACTGGAAAAATATATTGTATTATTGATGTCGAAGGTAACCTATCTGCTGAAAGTCCTTTCAGTGGAAATAATGAAAAATCCAAGGAAGACATTTCCTTCTCAGATTATTTCAGCAAAAGGTATGGGATTACACTGAGACATCCAAGACAGCCTCTTTTACTATTAAAGCAAAGTCATAATCCACACAATCTTCTTTTTAACTTCCATGAGGAAGATGCTCTGGGCAAGTCATCAGAAATTGGCCCTACAACCTCCAAAGTGCCTGCAAATGTTCACATCCCACCTGAGCTTCTATGTGTTCTTGAATTTAAAAGAAGTGTGTTGAGGTCATTGTACTTGTTGCCATCTCTAATGCATCGCATTGAATCGTTAATGTTGTCTAGTCAGCTTAGAGAAGAGATAGATGGTCAGACTAACAAGTCCAACATAAATAGCTCACTGATTCTAGAAGCACTTACAACTTTGAGATGCAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATATGTGGTGAGCTGTCATCTCTTTCTTAAATATCCCAAGAAACATGAAGGACACTTATCTGCCAGACGATCACAAATAGTTTGTAATTCAACCCTTCATAAACTGGCAACAGATCGCAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGTCGTTGGGTTGCTCCAGGACAGCGTTCTATACATCCTGTTTGTTGTGATTGTGGATTGGAAACGCTTGAAGTGCCTATAGATGTTAAATTCCATACTGAGGATCCAAAAGTAGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTAATAGGAGCATACTATGTGGGTGGTGGACTCTTTGCATCACTTAATGTGATGAAATGGCTTGGCATTGGCACTGAACTTGAACTATCCTTGGTTGATGAAGCAATCACTGCTGCCTCTCTGCATACATGCCTGCCAAAAGAAAGTGAAATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTATTACTGGAGGCTATCACACACTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTTGGTGACTCCGTATTGGACCTGCTTATCACATGGCATCTATATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGATCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAACATCTTCTACATGGCTCGGGATTATTATTGAGCCAGATATCAGAATATGTGAAGGCCATTTCTAAATCAGATTCTAGATCACTTCCAAGCATTAGAGCTCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGTTGGGGCTATGCTAATTGATACCAAGCTCAGTCTTGACAAAGTGTGGGAGGTTTTCTGTCCTCTATTATCTCCCATAGTTACTCCTGAAAAACTTGAATTGCCTCCATTTCGTGAGTTAAATGAATTGTGTGATTCTCTTGGGTATTTTGTAAAAGTAAATGAAAATTGTGAAAAAAAGGGATCCATGGTGCATGTTGAGGTTAGTGTACAACTTCCAAATGATCTGCTGGTTCGTGAAGGAAAGGGGGCAAATAAAAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTATTGAAGGATCTTGAGAAGCGGGGAATTTCATATTGTAATTTCATGTCCAAGGGAAAAAGAGATAATTCTGTCCATAGCAATGATTCATCTCATCTCAAAATGGATTCTAGTACTTGTTTTACTCTAATTGAAGAACATTCCTCAGAGCCAGTATCATGTAAAAGGAACAGATTGGATGAAAATAACCCAGCTGAAAGTATTTTGCCTCTCAAAGACTCTTCCAGTGACGGCTCTTGTTTTGGAGCTTCCATTCCAGTTCATTTATCAATTAATATGAAGAAGGGAGGACCACGGACCACACTATATGAGGTGTGTAAGAAACTACAGTGGCCAATGCCTGTATTTGATTCAACAGAATATAAAGATAGATCTTTATTTGAATCCTGTGAAGGCCTGCAAGGAAGCAAGGGACTGAACTGTTTTGTTTCGAAAATTACCTTGTGCATACCCAAGTATGGAAATATTGAATGCAAGGGAGAAGCTAGAAGTGATAAGAAGAACTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAACTGGGAAAAGTTGAAATTGTTCCTCCCCCTTCTAGTTAG 5016 0.3838 MNFNNDSSNHEQNQSKKRKQPDADHSPSLELPNSSMNPRRYQVEVFEVAWRRNTIAVLDTGSGKTLIAVMLMKEVGQTIKTRGVKKLIVFLAPTVHLVNQQFNNIKYLTSFQVEEYYGAKGVDTWTLKTWEKEISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTTDCEDQISELESILDSQRYTVEDRTEMDRYILSAQESCRYYDQARFSALSLKPKIEALWFKFDALLSENTSNYMDVENKFKMLSQRMSNELGKILHCLEDLGILCAYEAVKICRENFSKTEGMCEIYRTGYLQCISFVEEVIKLIEESLHCGDKKILGVDFDNSKAEEMGYISPKLLELIKIFQSLGESSQVLCLIFVDRIITAKVIERFAKKVPQISHFTVSYLTGNNTSVDAVAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRSQLFNIIRSERSMSDASINKDHESSLRVFTMGKIDAYYVESTGASVTLDSSVNLIHRYCGTLPRDQYSCAKPSYVFLPVEEGYQCKLTLPSNSAFQTIIGPSGKDVRLARHLACFEACKKLHQMGALNEHLVPFIEDLSEDDHIVKNKESSLGAGTTKRKELHGTTNIHALSGAWGDKHDDAARFFAYKIEFTCSIVSEIYSGFVLLIESKLDDDLRNIELDLYLVSKIVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGGEREFLLQKDTKSLWRVKHLYLLLPLEKLNGICEGALQINWHGINSCASAIEFLRRKFSLVTGDCDDNRIITSPQDTSSMEMECVGTNKIQFANCVVDADNVKGILVLAVHTGKIYCIIDVEGNLSAESPFSGNNEKSKEDISFSDYFSKRYGITLRHPRQPLLLLKQSHNPHNLLFNFHEEDALGKSSEIGPTTSKVPANVHIPPELLCVLEFKRSVLRSLYLLPSLMHRIESLMLSSQLREEIDGQTNKSNINSSLILEALTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGHLSARRSQIVCNSTLHKLATDRKLQGYIRDSAFEPRRWVAPGQRSIHPVCCDCGLETLEVPIDVKFHTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVGGGLFASLNVMKWLGIGTELELSLVDEAITAASLHTCLPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLSQISEYVKAISKSDSRSLPSIRAPKALGDLVESIVGAMLIDTKLSLDKVWEVFCPLLSPIVTPEKLELPPFRELNELCDSLGYFVKVNENCEKKGSMVHVEVSVQLPNDLLVREGKGANKKTAKGEASFHLLKDLEKRGISYCNFMSKGKRDNSVHSNDSSHLKMDSSTCFTLIEEHSSEPVSCKRNRLDENNPAESILPLKDSSSDGSCFGASIPVHLSINMKKGGPRTTLYEVCKKLQWPMPVFDSTEYKDRSLFESCEGLQGSKGLNCFVSKITLCIPKYGNIECKGEARSDKKNSFDSAAVKMLLELQKLGKVEIVPPPSS* 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01979 1671 Gene3D - 33 268 IPR027417 -
Lapu9g01979 1671 SMART riboneu5 1261 1412 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 SMART riboneu5 1052 1225 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 Pfam Ribonuclease III domain 1070 1204 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 Pfam Ribonuclease III domain 1282 1388 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 Pfam Type III restriction enzyme, res subunit 51 202 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lapu9g01979 1671 ProSiteProfiles Ribonuclease III family domain profile. 1033 1205 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 Pfam PAZ domain 885 1028 IPR003100 GO:0005515
Lapu9g01979 1671 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 220 IPR014001 -
Lapu9g01979 1671 CDD RIBOc 1052 1216 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 548 IPR001650 -
Lapu9g01979 1671 Gene3D - 1580 1660 - -
Lapu9g01979 1671 Pfam Dicer dimerisation domain 573 657 - -
Lapu9g01979 1671 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 573 663 IPR005034 GO:0016891
Lapu9g01979 1671 Gene3D paz domain 882 1014 - -
Lapu9g01979 1671 MobiDBLite consensus disorder prediction 11 25 - -
Lapu9g01979 1671 SUPERFAMILY PAZ domain 895 1008 IPR036085 GO:0005515
Lapu9g01979 1671 SMART ultradead3 34 233 IPR014001 -
Lapu9g01979 1671 SUPERFAMILY RNase III domain-like 1039 1223 IPR036389 GO:0004525|GO:0006396
Lapu9g01979 1671 CDD RIBOc 1262 1410 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 FunFam Endoribonuclease dicer-like protein 33 271 - -
Lapu9g01979 1671 Pfam Helicase conserved C-terminal domain 392 503 IPR001650 -
Lapu9g01979 1671 Gene3D Dicer dimerisation domain 568 665 IPR038248 -
Lapu9g01979 1671 ProSiteProfiles Ribonuclease III family domain profile. 1246 1389 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 ProSitePatterns Ribonuclease III family signature. 1282 1290 IPR000999 GO:0004525|GO:0006396
Lapu9g01979 1671 CDD DEXHc_dicer 36 234 - -
Lapu9g01979 1671 Gene3D Ribonuclease III domain 1033 1216 IPR036389 GO:0004525|GO:0006396
Lapu9g01979 1671 CDD SF2_C_dicer 382 514 - -
Lapu9g01979 1671 FunFam Endoribonuclease dicer-like 1 377 540 - -
Lapu9g01979 1671 Gene3D Ribonuclease III domain 1242 1412 IPR036389 GO:0004525|GO:0006396
Lapu9g01979 1671 FunFam Endoribonuclease dicer-like 1 568 664 - -
Lapu9g01979 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 514 IPR027417 -
Lapu9g01979 1671 SMART PAZ_2_a_3 869 1032 IPR003100 GO:0005515
Lapu9g01979 1671 FunFam Dicer-like 104 1028 1217 - -
Lapu9g01979 1671 Gene3D - 1415 1484 - -
Lapu9g01979 1671 SUPERFAMILY RNase III domain-like 1245 1409 IPR036389 GO:0004525|GO:0006396
Lapu9g01979 1671 PANTHER DICER-RELATED 52 1492 - -
Lapu9g01979 1671 FunFam Endoribonuclease dicer-like 1 1240 1410 - -
Lapu9g01979 1671 ProSiteProfiles PAZ domain profile. 894 1008 IPR003100 GO:0005515
Lapu9g01979 1671 Gene3D - 375 541 IPR027417 -
Lapu9g01979 1671 SMART helicmild6 419 506 IPR001650 -
Lapu9g01979 1671 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01979 Lapu-Chr9 34641162 34664708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01979 430 503 Eukaryotic Initiation Factors Gene Family AT3G19760 38.667 4.84e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01979 K11592 - gmx:100806831 2804.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01979 9 34641162 34664708 Lapu9g01979 9 34641162 34664708 ECH
Lapu3g00442 3 4491137 4503097 Lapu9g01979 9 34641162 34664708 ECH
Lapu9g00353 9 3669402 3684334 Lapu9g01979 9 34641162 34664708 ECH