Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01978 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCATTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGTTTCGTCCTCTGTGCAAGTGGCATCGTCAACTGCTCCTTTTGCTGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGTACAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAGCTAAAAATGGGCTTTTTGTTGTCACACTGGGTTGGTTTGTGGATAGCGTCAGGAGAACTGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTACGGGGATAACAACATGCGCATGGAGGATTTTAGACTGCTTTCTGAGTATACAAATGCCGACAATCATTGTCTTCCGGCAAGAATCCAACAAGCCAAGAAAGCTAATAGTGTTGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAAATTCGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAAGCATTTCATCCGAGCTGCGGAACAAGGTTACTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCACGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAATAACCTCATCACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCATGATGCTTGAAGACGTTCATAGTGGCGTTTCAGGAAAGGAAGTAATAAAGCAAAAAGTTTCTGGCAATCCTCTGGATAGTGAAAGTGAAGTCGGCTATGAAGAAAGACAACAAATTGTGAACTCTGCAAAAAATGGAGTCAGAAATCGCCGTGGCCGTCGAATGCAGACTTGTCAGACTCCAATACGTCCTATAACACCCAACAACCTACTAGACTCTATCTGCTGGTCTATTTCTGACCCAACTTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCACGCTACAATATTTTTCGATGCAAAGGGGGATGGCAAGGATTCAGAAGCTTCATTTTCAAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTCAGAAACCATTTCCTTACCATACTCTTCCCAATTGACCGATTTGCCGAGATGGGTCCTTCATCGAGAACGTTTTTCAGCCATAATGGTTTTACGTGTCTTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGTCAAGGCAGGAAATAGAAGTTGCAATTCATAGTGATTCAAGACATGCTGATAGACTTCGATCAGTGTACTCAAGTAAGGAAACAACAGCACGTGGCTATGTAATGTTCAAAAGGGTTGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGCTGAAGCGTGTAACTGGGGAAAACAACTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1623 0.4307 MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPVSSSVQVASSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQYSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRRTVRLSESHYRVKSYGDNNMRMEDFRLLSEYTNADNHCLPARIQQAKKANSVEELQRFSVRESIRNSDSTLSGCSIYVDPSISSELRNKVTETASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGMMLEDVHSGVSGKEVIKQKVSGNPLDSESEVGYEERQQIVNSAKNGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISDPTSTASIYTDSFSVEDPSENHATIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFRNHFLTILFPIDRFAEMGPSSRTFFSHNGFTCLQVLDHIHAFYQENMSRQEIEVAIHSDSRHADRLRSVYSSKETTARGYVMFKRVEFLGSRTSFEMLKRVTGENNSNVYELLLRA* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01978 540 Gene3D BRCT domain 49 141 IPR036420 -
Lapu9g01978 540 Pfam twin BRCT domain 54 121 IPR001357 -
Lapu9g01978 540 Pfam Family of unknown function (DUF6699) 364 524 IPR046522 -
Lapu9g01978 540 SMART BRCT_7 48 129 IPR001357 -
Lapu9g01978 540 SMART BRCT_7 195 271 IPR001357 -
Lapu9g01978 540 ProSiteProfiles BRCT domain profile. 46 139 IPR001357 -
Lapu9g01978 540 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 540 - -
Lapu9g01978 540 SUPERFAMILY BRCT domain 49 140 IPR036420 -
Lapu9g01978 540 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Lapu9g01978 540 ProSiteProfiles BRCT domain profile. 193 271 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01978 50 139 Core DNA Replication Machinery Family AT1G77320 36.667 4.25e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01978 - - gmx:100815253 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01978 9 34633909 34640437 Lapu9g01978 9 34633909 34640437 ECH