Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01969 ATGGTCTTCGAGATGGAGAATGATTGCATAGAGGACATGGACATTGAGGCTCTTCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTCAATATAGAAAAGCCTGGAAGAGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTTATGGAGCTTACAAATTTTACAGAAAAGGGATCTTCTCAGTTGGCGTACCTAATGAAACAATGGGAATACAAACAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAGCTCGACAACCTAAGCAAACAAAGGCAGGATGTTGAGCTCAGGAAATTGGAGATATTGGAAGAGCATCGATTTGAGGAAGAAAGATATGTGGGTGATAAACGCCCAGTTTCTATTTTGGATGACCTTTATGATGGTATATGGCAAGATATACCTTGCAGGAAAAGTGATGCTGTGGTCCAAAACAAGAGGAACGAGATTGATGCTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAGGCAAGTATCCAAAGGGAACAGATACTTGAAGAAAAGTTGCAAGAAAGTATAGCAAACATTGAAAGGCAGTCCTCACCGGTGGAAGAACTGTCCCAGATCCTGAGAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGATTTGCGCTATTGCTTTATATACAATCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAAAGAAGTTTTGGAAAAAGGATTACCAGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCTCCTTTGTCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTTGATTGGGAGCAAAGGCAACTCTTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGACCTTTCTAAGGTTGAGTCAGGAGTCATGAAGTTGGAAGCTACTAAATTCCGGCCAAGAGAGGTGGTCAAGCATGTACTCCAGACTGCTGCGGTTTCATTGCAAAAGATACTAACCTTGGAAGGACATGTAACTGATGATGTACCTATTGAGGTCGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCGTCAAGTTCACCCGTGAAGGCAAAATTGGAATAAACCTTTCTGTCGTGTCAGAGCCTACTTTTACAAAGGCAGGATACATCCAAAAGATGACTTCAAACCATTCAACTATTTCAGTGAATGGTTTGAAAGAAGAGATATATCTTTCAACGCCTCAAAGTGGCAACGATGGAAATCTTCTTGGTGATTGTCAAAAACATGATGGTTGTCCCGGCCAAAACCATGCATTCAATGATGAATGTAGATCACCGGTCAAAAGTGAATGCTCAATGAATGGAGACACTGACGAGCAACCTCATTCAAATGGAACAACAGTGTGGATACGTTGTGATGTGTATGACACAGGCATTGGAATACCAGAAGATGCTATACCAACATTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTACGGTGGCACAGGCCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGAGGTCGTCTAACAGTGTCTAGCAAAGAAAACTATGGTTCTACTTTCACTTTCATACTCCCATACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTATCTGATGCAGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAGCCACGCACTCTGGGTTCTCTATTCTCTTCTAATGGATCTAGCAGGACACAGATGTTATTACCACACAAAATTGGCTACACCGGTTCCCATAAACTTGGTGGATTTTCTGACAGTTTTTATTCAATCCTCTCTAATGATATCATGTCAAAAGAGACATGCTCAGTTGATGATTCATCTTCAGTTGTTGATGCTCCAGAGATGTCTGAATCGGCCAGTTCATCTGGTCACAGCTCAGAAACAAAGAACAGAAGTTTAGTGAACAGAGATAAACTGCAGCAAGATAAGGCTCATACTTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTTTGACAAGTGGAGAAATGGCTGTAGTAACAAAGTCATGTGAACCCCAACGAACTTGTCAGGGTCATGGGAAAACAAACACAAATATCGAATGTGTTACAAGCAACGGTACAGCGGGAGTAACAAAATCCTCATTTAGGCCCAAGATCCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACACAGTCCATGATGAAGCAATTAGGCCATAGCATAGTTGTTGTGAATAATGGAGTGGAAGCTGTACAAGCAGTTCAGCGCTGCACTTTTGACCTGGTTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTACAAGCAACAAAACTTATTCGATCTTTTGAGGAAACAGGAAATTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTCTACCAAATTCAGATTATGAATGTTCTGAACCTCCTAAAAAGCGGATTCCCATTGTTGCTATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGAATGGACTCGTTTGTGTCAAAACCTGTCACTTTCCAAAAACTGAAAGAATGTATTGATCAGTACCTAAGTTGA 3057 0.4082 MVFEMENDCIEDMDIEALPSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERYVGDKRPVSILDDLYDGIWQDIPCRKSDAVVQNKRNEIDAEYDTVMYWKQRALQLEKQLEASIQREQILEEKLQESIANIERQSSPVEELSQILRRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKKEVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKILTLEGHVTDDVPIEVVGDVLRMRQILTNLISNAVKFTREGKIGINLSVVSEPTFTKAGYIQKMTSNHSTISVNGLKEEIYLSTPQSGNDGNLLGDCQKHDGCPGQNHAFNDECRSPVKSECSMNGDTDEQPHSNGTTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKENYGSTFTFILPYKVSIACDNSDDQDELSDAENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTQMLLPHKIGYTGSHKLGGFSDSFYSILSNDIMSKETCSVDDSSSVVDAPEMSESASSSGHSSETKNRSLVNRDKLQQDKAHTWSLNGYADSSEATLTSGEMAVVTKSCEPQRTCQGHGKTNTNIECVTSNGTAGVTKSSFRPKILLVEDNKINIMVTQSMMKQLGHSIVVVNNGVEAVQAVQRCTFDLVLMDVCMPVMNGLQATKLIRSFEETGNWDAARNAGIEQSLPNSDYECSEPPKKRIPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECIDQYLS* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01969 1018 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Lapu9g01969 1018 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Lapu9g01969 1018 Coils Coil 92 119 - -
Lapu9g01969 1018 FunFam Putative histidine kinase 5 360 437 - -
Lapu9g01969 1018 FunFam Histidine kinase 5 214 349 - -
Lapu9g01969 1018 Gene3D PAS domain 213 349 - -
Lapu9g01969 1018 MobiDBLite consensus disorder prediction 773 796 - -
Lapu9g01969 1018 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 679 IPR003594 -
Lapu9g01969 1018 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Lapu9g01969 1018 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Lapu9g01969 1018 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Lapu9g01969 1018 FunFam Histidine kinase 5 867 1018 - -
Lapu9g01969 1018 ProSiteProfiles Response regulatory domain profile. 874 1017 IPR001789 GO:0000160
Lapu9g01969 1018 CDD REC_hyHK_CKI1_RcsC-like 875 1013 - -
Lapu9g01969 1018 Coils Coil 178 209 - -
Lapu9g01969 1018 Gene3D - 360 437 - -
Lapu9g01969 1018 Gene3D - 867 1018 - -
Lapu9g01969 1018 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Lapu9g01969 1018 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Lapu9g01969 1018 SMART REC_2 873 1013 IPR001789 GO:0000160
Lapu9g01969 1018 CDD HATPase_EvgS-ArcB-TorS-like 488 678 - -
Lapu9g01969 1018 SMART HKATPase_4 483 681 IPR003594 -
Lapu9g01969 1018 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 679 IPR036890 -
Lapu9g01969 1018 Pfam Response regulator receiver domain 875 942 IPR001789 GO:0000160
Lapu9g01969 1018 MobiDBLite consensus disorder prediction 773 802 - -
Lapu9g01969 1018 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Lapu9g01969 1018 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 1017 - -
Lapu9g01969 1018 ProSiteProfiles Histidine kinase domain profile. 379 681 IPR005467 -
Lapu9g01969 1018 SUPERFAMILY CheY-like 873 1018 IPR011006 -
Lapu9g01969 1018 Gene3D - 438 684 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01969 Lapu-Chr9 34518997 34525179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01969 1 1017 Histidine Kinase Gene Family AT5G10720 56.863 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu9g01969 HATPase_c 8.7e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01969 - - gmx:100819520 1728.76