Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01935 ATGGCAAAGTGTCACCGGAGTAACGTCGGATCCATCGCTATCGACCACCGACAAACCGCCAAAAATGCCAACGCTGGCGGCCACTTCCGCCTCCTCCGCCGCTTGATCTTTGACGCCGTCAGCTGCGGCGGTACCTCTCGCTACCGGTATCGCCAGCGGGGCGGCGGCGATGGAGACGTTGGGGAATTTAGCTCGACGGCTAGCCCTGCAGAGAAGGAGAGTTCGGAGAAGCTGTCGGATCTACTGAACGCGGCGGAGATGAAAACCGAGGCGGAGGCGGAGAGGAAGGAAGAGGCATTGGCGGAGCTGAAGAGAGTGGTGAAGGAGTTGCGCGAAGAAGACTTCACGATGCGGAGAATCGCGGCGGCGGCCAGAGTGAGGTCGCTAGCGAAGGAAGATTCCGAAGCGAGAGCGAGTCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTTGATTCGGAAGATGCTCATTCGCAAATCGCTGCACTCTACGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATCGGCACTGTGCACAAGATGCTGAAGCTAATTGAATCGAGTGAAACGGATTCGTCGGTGGCCGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTCTGGATTCGAATAAACCGATAATAGGATCCTCCAGTGCAATACCGTTCCTAGTTAGCACCCTAAAACATTTAGACGCTAGTAAAACCGCATCGCAATCGCAAGTGAAGCAAGATGCTCTGCGGGCTTTGTACAATCTTTCGATCTGTCAGAGCAACGTTTCGGTGGTTTTGGAGACTGATTTGGTTTGGTTTTTAGTGAGCGCAATAGGGGACATGGAAGTGAGCGAGAGGAGTCTCGCGATTCTCAGCAATTTAGTGTCGACTCCGGAGGGAAGAAAAGCGATCAGTGGTGTGAGCGATGCGATTCCAATTCTGGTGGATGTGTTGAGTTGGACAGACTCACCAGAGTGCCAAGAGAAGGCGTCGTATGTGTTGATGATTATGGCACACAAAGCGTACGGGGACAGGCGGGCCATGATCGAGGCAGGGGTTGTGTCGTCGCTGCTTGAGTTGACGCTTGTGGGAACCACGTTAGCTCAGAAGAGGGCCTCCAGAATATTGGAGTGTTTGAGGGTGGATAAGGGGAAACAGGTTTCTGGGAGCTACGCGGCAAACTTGAATTTGGGTGTATCTGCTCCTATTTATGGTGGCTCTTCTTCATCCAAGGGTGGTGGTGATGGTGGTGGAGGAGGAAAAGGGTCCTTGGTACAGGAGGAAGATGGAATGATGATGAGTGAGGAAAAGAAAGCGGTGAAACAGTTAGTGCAACAGAGTCTGCAGAATAACATGATTAAAATCGTGAAGAGGGCAAACTTGCGTCAGGATTTGGTTCCGTCTCCCCATATTGCTTCACTCACTTCTAGTTCCACTTCCAAGAGCCTCCCATTTTGA 1482 0.5202 MAKCHRSNVGSIAIDHRQTAKNANAGGHFRLLRRLIFDAVSCGGTSRYRYRQRGGGDGDVGEFSSTASPAEKESSEKLSDLLNAAEMKTEAEAERKEEALAELKRVVKELREEDFTMRRIAAAARVRSLAKEDSEARASLAMLGAIPPLVGMLDSEDAHSQIAALYALLNLGIGNDANKAAIVKIGTVHKMLKLIESSETDSSVAEAIVANFLGLSALDSNKPIIGSSSAIPFLVSTLKHLDASKTASQSQVKQDALRALYNLSICQSNVSVVLETDLVWFLVSAIGDMEVSERSLAILSNLVSTPEGRKAISGVSDAIPILVDVLSWTDSPECQEKASYVLMIMAHKAYGDRRAMIEAGVVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSYAANLNLGVSAPIYGGSSSSKGGGDGGGGGKGSLVQEEDGMMMSEEKKAVKQLVQQSLQNNMIKIVKRANLRQDLVPSPHIASLTSSSTSKSLPF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01935 493 SUPERFAMILY ARM repeat 103 388 IPR016024 -
Lapu9g01935 493 Gene3D - 70 245 IPR011989 -
Lapu9g01935 493 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 493 - -
Lapu9g01935 493 Coils Coil 82 113 - -
Lapu9g01935 493 Gene3D - 246 401 IPR011989 -
Lapu9g01935 493 Pfam Armadillo/beta-catenin-like repeat 134 171 IPR000225 GO:0005515
Lapu9g01935 493 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 186 IPR000225 GO:0005515
Lapu9g01935 493 SMART arm_5 175 217 IPR000225 GO:0005515
Lapu9g01935 493 SMART arm_5 266 304 IPR000225 GO:0005515
Lapu9g01935 493 SMART arm_5 305 347 IPR000225 GO:0005515
Lapu9g01935 493 SMART arm_5 133 173 IPR000225 GO:0005515
Lapu9g01935 493 SMART arm_5 218 265 IPR000225 GO:0005515
Lapu9g01935 493 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01935 Lapu-Chr9 34221487 34223434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01935 110 394 U-box Gene Family AT1G67530 30.822 5.78e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01935 - - gmx:100796229 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00661 8 24512862 24516494 Lapu9g01935 9 34221487 34223434 PCT