Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01931 ATGAGTAGTTTGGTGGAGAGACTTCGCGTAAGATCTGATCGCAGGCCAATTTATAATCTTGATGAGTCAGATGACGATGCTGATTTTTTGCCAAAAAAATCCGGGACAACACAGGAAAAGTTAGAGAGAATAGTGAGAAATGATGCGAAAGAGGATTTATGTCAAGCCTGTGGTGAAAATGAAAATCTTGTGAGTTGTGAAACTTGCACGTATGCTTACCATCCTAGATGTTTACTTCCACCCCTTAAAGGTCCACTTCCAGACAATTGGAGGTGTCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGACCTACTACAGCTGCTGATAATGATGCCCCAAAATTAGGGTCCAAACAAATTTTTGTAAAACAATACCTTGTTAAGTGGAAGGGCCTATCATATTTGCATTGCACATGGGTGCCGGAGAAAGAGTTTTTGAAGGCATTTAAGACTCATCCTCGTCTGAAGACAAAGGTGAACAACTTCCATCAGAAAATGGCATCTATCAATACTTCTGATGATGACTTTGTAGCCATTCGACCTGAATGGACTACAGTTGACCGAATACTTTCTTGCAGGGGTGATGATGATGAGAGAGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGACGAGTGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTTCGGTCTAGATCCAGTAAATTTTCTTCTTCCAGTAAACAAAAACACAGTGTTAAGGATGATACTGAAGTGAAAAAACAACAGAAAGAATTTCAACACTATGAACACAGCCCTGAGTTTCTCTCAGGTGGTACATTGCACCCATATCAGCTTGAAGGCTTGAATTTCTTACGATTCTCTTGGTCCAAGCAGACCCATGTTATACTTGCTGATGAAATGGGACTTGGTAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGAGTGTCTCCCCACATCTGGTGGTCGCTCCACTTTCAACTCTGCGAAATTGGGAACGTGAATTCGCCACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGACAGGATTAAGTTTGATGTTCTGTTGACATCATATGAGATGATCAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGCCACCGTCTGAAAAATAAGGATTCAAAATTATTTTCTTCACTAAAGCAATATTCTAGCAGACATCGTGTTCTCTTGACAGGAACACCTCTTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTATTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGATTTCTCTTATCAATGTTGTTATGGAATTGCGTAAGCTCTGCTGTCATCCTTACATGTTAGAAGGAGTAGAACCAGATATTGATGACGCAAAAGAAGCATACAAACAGCTACTGGAGTCGTCAGGGAAGCTGCAATTGCTGGACAAGATGATGGTCAAACTTAAAGAGCAAGGACATAGAGTCCTTATATATTCCCAATTTCAGCATATGCTGGACTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTTAATGCAAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGACTAGGGATAAACCTTGCAACTGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCACCGGCTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAGGAAAGGATGATGCAGATGACTAAAAAGAAAATGGTGTTAGAACACCTAGTTGTGGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGATACGGATCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCTGGCAAATCCCGCCAAATACATTATGATGCTGCTGCTATCAATAGACTGCTAGATCGTGATCAAGTTGGTGATGAAGAGGCTACTTTGGATGATGAGGAAGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAGGCTGAGGCTGCAGCAGAGGAGGCAGCCCAAAAAAGAGCATTGGAGACCCAAAACAATTCGGAAAGAACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAACATAAAGTTGAGGAGTTTAATGCCTTAGGAAAAGGGAAGCGAAATCGGAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCCGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGATAATTATGAAGCAGAGCTTACCGATGGTGATTCAAATTCCACTGGAACTGGAACTACTACTGCTAGAAGGCCTTATAAAAAAAAAGCTCGTACAGATAGTACAGAGCCACTTCCTCTGATGGAAGGTGAAGGCAAAGCATTCAGAGTACTTGGTTTTAATCAAAACCAGAGGGCTGCCTTTGTGCAAATATTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTACGAAGAAATCAAAGATTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGAATCCTCTACATTCTCAGATGGTGTACCAAAAGACGGACTACGAATCCAAGATGTACTTGTTAGGATTGCTGTCCTGCTCTTGATAAGGGACAAGGTGAAGTTTGCGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATCATATTACGCTATCCAGGTTTGAAGGGTGCGAAGATATGGAAGGAGGAGCATGATTTGGTTTTGTTGCGTTCTGTTTTGAAGCACGGGTATGGAAGGTGGCAAGCTATTGTTGATGACAAGGATCTGAAAATTCAGGAGATCATCTGTCAGGAGTTGAATCTTCCTTTTATAAACTTACCAGTTCCAGGACAAGTTGGCTCTCAGGCACAAAATGGTGCAAATTTGACAAATGCAGAAGTACCGAACAATCAATCCAGGGAAAATGGTGGGAGTGATATACCAGCTGAGGGTGGGCAAGGTTCTGGTGATGCCAGGAATCAAGCGCAATTATATCAAGACTCCTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGGCTCAATGCTGAATACCAGAAAGAATACTTTGGTGATCCAAAACCTAATGACGACCTTAAAAGTGAGCCCAAGGCTCCTAATTTTCCAAGTTATAAATTAGGGGAAACTGACACCCAAATTGATCAACTACCGCAACTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGCTTGTGATAGTGATCCCAATCGATTGGAGTTAGTTCGTCTTTACAATGAGATGTGCAAGGCAGTGGAGGAAAATCCCATGGATTTAGTTCAAACTTCTTTGGCAAGAGAACCAGCAGAGCTTAATGTAGTGAAGAATTTCCCACCACTAGAAACCATTTGCAAAGACATCAACAGCATTCTAACACCCGCACAGGAACAACCTGCTGCAGATATTCCAATATCAAATTCAGACAACAAATCGGAGGCTATGCCGTACGGTGAGATTTTGGGCGTCAAATCACTGCCAAACCCTCTAGATGCTGGCAAACCTGAAGACTCAGCAAACAATGAGAGTAAAGACATGATAATAGAATCTGAACCTATAAAAGAAAGTTGCTCAAGCCTGGTAGAAGATAAGAATGAAATTCAGATTCTTCTGGATAAAGAGAAAAGTAGTACAGAAGTGGATGAAACTATGACTGATGCTGAGTAG 4278 0.4037 MSSLVERLRVRSDRRPIYNLDESDDDADFLPKKSGTTQEKLERIVRNDAKEDLCQACGENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDAPKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASINTSDDDFVAIRPEWTTVDRILSCRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSSKFSSSSKQKHSVKDDTEVKKQQKEFQHYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEESVSPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAINRLLDRDQVGDEEATLDDEEEDGFLKAFKVANFEYVDEAEAAAEEAAQKRALETQNNSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTGTTTARRPYKKKARTDSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITESSTFSDGVPKDGLRIQDVLVRIAVLLLIRDKVKFASQHPQTPLFSDDIILRYPGLKGAKIWKEEHDLVLLRSVLKHGYGRWQAIVDDKDLKIQEIICQELNLPFINLPVPGQVGSQAQNGANLTNAEVPNNQSRENGGSDIPAEGGQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKPNDDLKSEPKAPNFPSYKLGETDTQIDQLPQLETIASEEISAACDSDPNRLELVRLYNEMCKAVEENPMDLVQTSLAREPAELNVVKNFPPLETICKDINSILTPAQEQPAADIPISNSDNKSEAMPYGEILGVKSLPNPLDAGKPEDSANNESKDMIIESEPIKESCSSLVEDKNEIQILLDKEKSSTEVDETMTDAE* 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01931 1425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Lapu9g01931 1425 SUPERFAMILY Chromo domain-like 66 178 IPR016197 -
Lapu9g01931 1425 Gene3D - 530 754 IPR027417 -
Lapu9g01931 1425 CDD CD2_tandem 190 239 - -
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 905 955 - -
Lapu9g01931 1425 SMART PHD_3 53 96 IPR001965 -
Lapu9g01931 1425 CDD CD1_tandem 98 171 - -
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 924 938 - -
Lapu9g01931 1425 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Lapu9g01931 1425 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Lapu9g01931 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 520 IPR027417 -
Lapu9g01931 1425 Pfam CHD subfamily II, SANT-like domain 936 1069 IPR009462 GO:0003677|GO:0006338
Lapu9g01931 1425 Gene3D - 279 529 IPR038718 -
Lapu9g01931 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 778 IPR027417 -
Lapu9g01931 1425 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 485 IPR014001 -
Lapu9g01931 1425 Gene3D - 184 241 - -
Lapu9g01931 1425 SMART DUF1087_2 840 906 IPR009463 -
Lapu9g01931 1425 Gene3D - 1039 1215 - -
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 1374 1396 - -
Lapu9g01931 1425 Pfam Helicase conserved C-terminal domain 610 723 IPR001650 -
Lapu9g01931 1425 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Lapu9g01931 1425 SMART DUF1086_2 916 1072 IPR009462 GO:0003677|GO:0006338
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 1363 1396 - -
Lapu9g01931 1425 CDD SF2_C_SNF 608 734 - -
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 905 923 - -
Lapu9g01931 1425 ProSiteProfiles Chromo and chromo shadow domain profile. 192 254 IPR000953 -
Lapu9g01931 1425 Gene3D - 100 175 - -
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 1146 1161 - -
Lapu9g01931 1425 Pfam CHD subfamily II, DUF1087 845 903 IPR009463 -
Lapu9g01931 1425 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 1146 1176 - -
Lapu9g01931 1425 SMART chromo_7 99 162 IPR000953 -
Lapu9g01931 1425 SMART chromo_7 190 244 IPR000953 -
Lapu9g01931 1425 Coils Coil 839 859 - -
Lapu9g01931 1425 Pfam PHD-finger 54 96 IPR019787 -
Lapu9g01931 1425 SMART ultradead3 283 496 IPR014001 -
Lapu9g01931 1425 Pfam SNF2-related domain 307 587 IPR000330 GO:0005524|GO:0140658
Lapu9g01931 1425 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Lapu9g01931 1425 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 613 774 IPR001650 -
Lapu9g01931 1425 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 46 1334 - -
Lapu9g01931 1425 SUPERFAMILY Chromo domain-like 185 242 IPR016197 -
Lapu9g01931 1425 MobiDBLite consensus disorder prediction 1220 1248 - -
Lapu9g01931 1425 SMART helicmild6 639 723 IPR001650 -
Lapu9g01931 1425 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01931 Lapu-Chr9 34159875 34183229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01931 309 784 RAD5 or RAD16-like Gene Family AT1G02670 23.381 3.81e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu9g01931 SNF2_N 6.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01931 K11643 - gmx:100790230 2575.82