Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01930 ATGACTGTGGAGAAGAGAATGAGTGATTCCGGCGAAGCTTTTCCTGTCGGAATGCGTGTGCTCGCCGTCGATGATGACCCCATCTGCCTCATGATTTTGGAAAATCTCCTCCGGAAATGTCAATATCATGTGACCACAACAAATCAAGCAATAAGAGCGTTGGCGCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTACTAATGGTGATACGAAGCTGGTGATGAAGGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTGATCAGAAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAACCCACATCTGATAGTGGCAATGGACATGGGTCATCAGGAGCCATAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGATGAGGAGCAGGAGAATGATCATGACAATGAGGACCCATCAACCCAAAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCAGCTGTTAACCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAAAATGTGGCGAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGTTGTGTGGCTAACCAACAGGCAAATATGGTGGCGGCCTTAGGGGGTGCTGATCCATCCTATTTGAGAATGAGTTCTGTGAGTGGGGTTGGACATTTACAAACATTGAGTGGTTCTGGACAGCTTCCTAACAGTGGTTTTAGATCCTTTCCTCCTGGTGGGATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTTCTTCAGTTGAGCCAGTCACAAAATTTAAACAACACCAATGATCATCTTAAGTTCCGGTCAGCCATGGCTCCTGTTAATCAGAATGCTGTTCAGGGAATGCCAATATCTGTTCAAAATAACAAGAGTGTCATTTCTGCTCAAAATTTAACCACTGTTTTCAATGCCAAAACAAATTTTCCCATCTCAAATAAACTCCCAGATCCAAGACCAAAAATAACGACGTCTGTTTCTTGCACTCCAGATGTAGGTATGTCAAACAATACCTTGATGTTGGAACCATGCCCTCAAGGTACGCAAGGGAGTGTAAGAATTGAAACTTTATCTTCTTCAGTAGCCTCTCAGCATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGCTAGATATAGTGATGGTTGGACAAGTGCTGTGCAGCCGTCTGTGATCCAGACAAACTCTTACCCTCCAAGTGAATGTTTTAAACAGACTAATATAAATCCTCCAGATAACATGTCTTCTGTACCTCTCCAAGGTGGGAATCTTAGTGGTCCATCCATCACTTCACTGTCCAGGCAATCCCGTGATTCAATGACAGATATGCACTCTGACCGGGTGTCTTTAAGTAACAGACCTGGGCATATAAGCAGTAATGTGCCATTTCAGGGGTGGGATGACCGTAATCAGGATGCTACTCACCATTCAAATAATATATTCGCATCAATGAACTCACTGACTCCAGTCAATGCTGCTGCTGTTCCAGTGGGCCATGCAGCAACAAACTCAGGCTCACATAGAAACTTGGACTTCAATTTTTGTGATCCCTTACAAATGAAGCATGATGGGTTTGTGGAATTAACTGAAGAGATCTCATCTAAACAACATCAGGGGATTATCCTGAACCAGCAGAAGTCTCAACATAGTCATTTCTCTAGTAATCTTGGTTCATTGGAGGACTTGGTCAGTTCAATGATGAAACAGGAGAAAGATAGGCTGAAATTATTGGGTGGAAACCTCATTTGTGATAACTACTCTGGTGGGTTATCTATGTGA 2034 0.4292 MTVEKRMSDSGEAFPVGMRVLAVDDDPICLMILENLLRKCQYHVTTTNQAIRALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSTNGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSDSGNGHGSSGAINSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVSGVGHLQTLSGSGQLPNSGFRSFPPGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNDHLKFRSAMAPVNQNAVQGMPISVQNNKSVISAQNLTTVFNAKTNFPISNKLPDPRPKITTSVSCTPDVGMSNNTLMLEPCPQGTQGSVRIETLSSSVASQHSEFSLPLLDQARYSDGWTSAVQPSVIQTNSYPPSECFKQTNINPPDNMSSVPLQGGNLSGPSITSLSRQSRDSMTDMHSDRVSLSNRPGHISSNVPFQGWDDRNQDATHHSNNIFASMNSLTPVNAAAVPVGHAATNSGSHRNLDFNFCDPLQMKHDGFVELTEEISSKQHQGIILNQQKSQHSHFSSNLGSLEDLVSSMMKQEKDRLKLLGGNLICDNYSGGLSM* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01930 677 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Lapu9g01930 677 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Lapu9g01930 677 MobiDBLite consensus disorder prediction 141 206 - -
Lapu9g01930 677 CDD REC_typeB_ARR-like 20 134 - -
Lapu9g01930 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Lapu9g01930 677 MobiDBLite consensus disorder prediction 151 171 - -
Lapu9g01930 677 PIRSF RR_ARR_type-B 1 674 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lapu9g01930 677 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lapu9g01930 677 SUPERFAMILY CheY-like 17 141 IPR011006 -
Lapu9g01930 677 FunFam Two-component response regulator 200 263 - -
Lapu9g01930 677 Coils Coil 172 192 - -
Lapu9g01930 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 380 IPR045279 GO:0009736
Lapu9g01930 677 Gene3D - 17 153 - -
Lapu9g01930 677 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Lapu9g01930 677 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Lapu9g01930 677 Gene3D - 200 263 - -
Lapu9g01930 677 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01930 Lapu-Chr9 34153298 34158302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01930 1 449 Response Regulator Gene Family AT2G25180 52.034 4.92e-131 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu9g01930 Response_reg 8e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01930 - K14491 gmx:100809002 1135.17