Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01929 ATGGAAGCACCGAACTACCAGGCTCACTTCTATGAAAGCCTTTCTGCTGGAGAGACTCCTCCAAGTCCAAGCACACCATTGCAGAATCCACAGGAGAAGAAACAACTATCTGTTGAGGAAGAAGAAGAGGAAGAAAAGGAGGCAAAAATTGATACTTCACTGGATCTAAATGTCCCAGGTGATGATTCTGCTCTTGGGTGCAGTCCAGTGCTGAATCTCATCACGTGTTTGGACACAGATTTGTCATCAGAAAATCCTGATGAGCCGCGAGTGTTCTCTTGCAACTACTGCCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAATGCTCACAAAAAGGAGAGGTCAATTGCAAAGAGAGGTCACAGATCAGGATCACGCATGATGGTACCAGCAACAGCTTTTGGAATTCCCTTTCTCCACAATCACCTTCCTCACTATGCCACTGTGGCTTCTTTGCCTCTCCATGGTGCTTGTAGTAATAAACCAATAGGAATTCAAACTCACTCTATGATTCACAAGCCTCCGCCTCCTTCTTCTCATTTTTCATTCAATGGGTTTGGAAACACTTTTGGACATCATCATGGGTGGTCAAGACCCCTTATTACTCAACAACCTGGAATAGGGAAGTTAAGCATGGAAAGTTGTCACAAAACATCACGAGGCAGTGTTGGGAGATTCAAAGAGGTGAGCACCATGCTCAATTCAGCAGGTAATGAAGAAATAAGTGGAATTACTCCCTTGAAGAGTAGTAAAGAAGAAAAGAAGCACCTTGACTTGTCCCTAAAGCTTTGA 804 0.4415 MEAPNYQAHFYESLSAGETPPSPSTPLQNPQEKKQLSVEEEEEEEKEAKIDTSLDLNVPGDDSALGCSPVLNLITCLDTDLSSENPDEPRVFSCNYCQRKFYSSQALGGHQNAHKKERSIAKRGHRSGSRMMVPATAFGIPFLHNHLPHYATVASLPLHGACSNKPIGIQTHSMIHKPPPPSSHFSFNGFGNTFGHHHGWSRPLITQQPGIGKLSMESCHKTSRGSVGRFKEVSTMLNSAGNEEISGITPLKSSKEEKKHLDLSLKL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01929 267 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lapu9g01929 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Lapu9g01929 267 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 267 IPR044246 GO:0009788
Lapu9g01929 267 Gene3D Classic Zinc Finger 78 135 - -
Lapu9g01929 267 MobiDBLite consensus disorder prediction 17 33 - -
Lapu9g01929 267 SUPERFAMILY beta-beta-alpha zinc fingers 89 119 IPR036236 -
Lapu9g01929 267 MobiDBLite consensus disorder prediction 1 55 - -
Lapu9g01929 267 MobiDBLite consensus disorder prediction 108 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01929 Lapu-Chr9 34136832 34137849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01929 22 267 C2H2 Transcription Factor Family AT5G10970 39.483 2.37e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu9g01929 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01929 - - gmx:100783199 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00655 8 24410751 24412105 Lapu9g01929 9 34136832 34137849 PCT