Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01920 ATGGATCAAGATAGAGGTGAGGCATTGGATCCGGTTCATGATGGGAATTTAAGTCATTTGGTGGAAGGGGTTGCAATTGGTAGAGATAGTATAAGTGGAGAAGCTGGAACTTCAAGACAGGTGGATGGGAATTCGGGATCTGATAAGGAGCCAAAGGAGGAAGTCATGGCTCAAGACAAGTTTGGTCGAGAAAATTCTTGTGATAAGTTACCTGGGGTTGATCAGGGAACTAGTTGTAATTCAAACCATTTGGTTAATCAAGAAGTGATTGAAACTGTGGTTGTGATTGAATCTGTTCAGACTGAGTACATCAATCAAGATAATAGGAAATTGGAAGTGAAAGTTGAGGAATCAGGGTTGAGCTTGGTGTCCATGAAAGCACCAAAAGAGGTGTCTGAAACTGATAAAAGTTCATGTGTGATAGATATAAAGTGCAGCAGCCACAAAAATTTGTATGAGAATTCTGAAGGTGAAACGATTTGTAGGATTTGCCATCTGACTTCTGGTCAGTCATCCGATGTAACAGTTGTTGGAATTGCTAATAGTGGTACAAGTGTAGATTTGATTCAGCTTGGTTGTGCCTGTAAAGATGAGCTAGGCATTGCGCACGTTCACTGCGCTGAGGCGTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGTGAGCCTGCAAAAAATGTTTCAGGTGTTACCAGTAATGGATTTATAGAAGAGTGGAATGAAAGAAGATTCATGGACGACGATGGTAACTCATCCCCCAGGGTTGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCGTTTGTTCTGCCGTGGTTTTTTCGTGTAAATATATTCTAG 870 0.4207 MDQDRGEALDPVHDGNLSHLVEGVAIGRDSISGEAGTSRQVDGNSGSDKEPKEEVMAQDKFGRENSCDKLPGVDQGTSCNSNHLVNQEVIETVVVIESVQTEYINQDNRKLEVKVEESGLSLVSMKAPKEVSETDKSSCVIDIKCSSHKNLYENSEGETICRICHLTSGQSSDVTVVGIANSGTSVDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVTSNGFIEEWNERRFMDDDGNSSPRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNIF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01920 289 MobiDBLite consensus disorder prediction 28 67 - -
Lapu9g01920 289 PANTHER ZINC FINGER, RING-CH-TYPE 56 289 - -
Lapu9g01920 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 234 IPR013083 -
Lapu9g01920 289 SMART ringv_2 160 223 IPR011016 GO:0008270
Lapu9g01920 289 MobiDBLite consensus disorder prediction 45 67 - -
Lapu9g01920 289 Pfam RING-variant domain 161 222 IPR011016 GO:0008270
Lapu9g01920 289 ProSiteProfiles Zinc finger RING-CH-type profile. 153 229 IPR011016 GO:0008270
Lapu9g01920 289 SUPERFAMILY RING/U-box 155 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01920 Lapu-Chr9 34019456 34021863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01920 141 288 C3H Transcription Factor Family AT5G05830 39.869 1.60e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01920 - - gmx:100776373 460.299