Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01913 ATGGGAAAGCCCACAGGGAAGAAGAAGGGTATCCCTACTCCTGGTGCTGCAAATTCACACGCCAAACCTGCCAAGGCCTCCAAAGCTTTCGATGAAGATACGGCAATGTTCATTAACATGTCACAAGAGTTCAGGGAAGAAGGTAACAAGTTGTTTCAGAAGAAGGACCACGAAGGCGCCATGCTCAAGTACGAGAAGGCACTGAAGCTGCTTCCGAAGAATCACATAGATGTCGCACACCTTCATACCAACATGGCCACGTGTTACATGCAATTGGGACTCGGGGAATACCCTCGAGCCATTCACGAATGTAATTTGGCGCTGGAAGTGTCTCCAAGGTACAGCAAAGCTCTTCTGAAAAGAGCCACATGCTATCGTGAGCTTAATCGCTTGGATTTGGCACTCAGGGATGTCAATCTTGTTTTGAGCATGGAGCCAAATAATCTCACCGCCTTGGAGTTTCTCTCGAGTCTCACCAAGTCAACGGAAGGAAAAGGGGTCTCTGTTGATGATAAAGGGATGGCTTTTGATACCACCATTTATCACACTCCTTCTCCTTCTTCGCAAAAACTGAAGAAAAAGAGAGGTAAAAAAATCGAGGACAAGGTCGTTGTGGAGGAAAAGGTGGGTGTTATTGTAGAGGATAAAAAGGTGGTTTCAAAAATTATTGGGCAAGAAAGAAAGGTGGTTTCAAAAACAATTGGGCAAGAAAGAAAGGTGGTTTCAAAAACAATTGAGCAAGGAAAAAGGGCGATTTCAAAAGCAATTGAGCAAGAAAAAAAGGTGGTGGAAGTCGAACCTGTGGAGGAAGAAAAACCTCTCACGAACACGATCACGATCACAAGGAGCGTGAAGTTGGTATTTGGAGAAGATATAAGGTGGGCTCAGTTGCCCGTGAATTGTAGTGCGAAGTTGGTGAGGGATATAGCTAGAGACAGGTTTCCAGGTTTGAAGGGAGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACAACTACAGATGAACTAAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTACTGAGGTAAGTCCAGATCAAGAACCTTCTTATGATGGAACAACAACCGATGGGGATGAGGTGCAAAGGGACGGTGGAAAACGAAATGATGGCTTTGAGAATGGGGGCATAGAAGAAGACAGAGATGAAGATGCTTCAAAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTTTGCAATGAAGCTGTACGGAGAGGCGATGGAGGATACGGTAGCAAGCAGTGATGCTCAAGAACTTTTTGGAATTGCTGCTGATAAATTCCAAGAGATGGCTGCCTTGGCATTGTTTAATTGGGGAAGTGTTCAAATGTCCAGGGCAAGGAACCAAGGTTCCTTTTCGGAGGATGGGGTCAGAGAATCTTCCTTGGAGCATATAAAAGCTGCATATGAGTTAGCACGAAGGGAGTACGAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTACGAAGGATATCTTGCTCTCGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAGGGACTCAGATGCTGGCTTTGCTGATGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAGAGAACAGTTAGAGAAAATGGGATTGGATGGTCTTTTCAAAGATGTTTCTGATGATGAAGCTTCAAAGCAAGCGGCAAAGATGAGGTCTCAGATACACCTTTTATGGGGAACCTTGTTGTATGAACGTTCTGTAGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAACTTCTGCAACAGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTCGAAGGGTTCAAAATTGATGAGATAGTACAAGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTAGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTCCTTCTTGGAGCAGTTTTAA 2226 0.4394 MGKPTGKKKGIPTPGAANSHAKPAKASKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLKYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALEVSPRYSKALLKRATCYRELNRLDLALRDVNLVLSMEPNNLTALEFLSSLTKSTEGKGVSVDDKGMAFDTTIYHTPSPSSQKLKKKRGKKIEDKVVVEEKVGVIVEDKKVVSKIIGQERKVVSKTIGQERKVVSKTIEQGKRAISKAIEQEKKVVEVEPVEEEKPLTNTITITRSVKLVFGEDIRWAQLPVNCSAKLVRDIARDRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGTTTDGDEVQRDGGKRNDGFENGGIEEDRDEDASKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDTVASSDAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGSFSEDGVRESSLEHIKAAYELARREYEKAEMRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYALACRDSDAGFADEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYREQLEKMGLDGLFKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFSDPSFRLEPLFRRRVPKLHSFLEQF* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01913 741 MobiDBLite consensus disorder prediction 374 402 - -
Lapu9g01913 741 Gene3D - 278 360 - -
Lapu9g01913 741 MobiDBLite consensus disorder prediction 362 402 - -
Lapu9g01913 741 CDD PB1 284 357 - -
Lapu9g01913 741 Gene3D Tetratricopeptide repeat domain 38 165 IPR011990 GO:0005515
Lapu9g01913 741 Coils Coil 501 528 - -
Lapu9g01913 741 SMART PB1_new 281 360 IPR000270 GO:0005515
Lapu9g01913 741 PANTHER PROTEIN CLMP1 1 739 IPR044517 -
Lapu9g01913 741 ProSiteProfiles PB1 domain profile. 281 360 IPR000270 GO:0005515
Lapu9g01913 741 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Lapu9g01913 741 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Lapu9g01913 741 SUPERFAMILY CAD & PB1 domains 278 369 - -
Lapu9g01913 741 MobiDBLite consensus disorder prediction 1 28 - -
Lapu9g01913 741 SUPERFAMILY TPR-like 41 549 IPR011990 GO:0005515
Lapu9g01913 741 Pfam PB1 domain 281 358 IPR000270 GO:0005515
Lapu9g01913 741 SMART tpr_5 499 532 IPR019734 GO:0005515
Lapu9g01913 741 SMART tpr_5 115 148 IPR019734 GO:0005515
Lapu9g01913 741 SMART tpr_5 79 114 IPR019734 GO:0005515
Lapu9g01913 741 SMART tpr_5 41 74 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01913 Lapu-Chr9 33917607 33922923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01913 25 148 Calmodulin-binding Proteins AT3G25230 31.579 5.46e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01913 K26538 - gmx:100805760 1180.62