Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01888 ATGCCTGAGCTGCTACATGGTATTCTTAAGGTAACCATATTTGAAGTTGATAGACTTCATACTGGATGTCATTTGGATTTCTGTCAGCAGATTGTTGGGACAAGATTGTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACGAGAATGATAGGAAACCAACCCTCTCACCCAAAGTGGAACGAGAGCTTTGAAATCTACTGTGCCCATCATATCTCAAACATCATATTCACTGTCAAAGATGGTAACCCAATTGGAGCAACTCTAATTGGAAGAGCCTATGTTCCTGTGGAGCAAGTTCGCAAGGGCCCCATAGTTAAGAGGTGGGTTGAGATATTAGACGAAGAAGATCATCGTCCGGTGCCGGGTCACTCCAAAATCCGTGTCAGCATGCAATTCAATAGCGTCATGCAGGACAGAACATGTTCATGGTCTCAGGGAATTCGCATGCCATTTTCTGGAGTTCCTCGTACATTTTTCAATCAGAGAGAAGGTTGTCATGTTACTTTGTACCAAGATGCTCATGCCCCACGCGGCGTTGGTGTTGTCCCTTATATTCCAATATCCGAAGGAAAAGACTACTTGCCCGCAAGATGTTGGGAGGACATTTACACTGCCATTGTGGAAGCTAAGTATTTTATTTACATAGCTGGTTGGTCTGTTTACACTGAAATAGCATTGGTTAGAGACAAAGAGGAATCAAATATCACCCTCGGGGAGTTACTTAAGAAGAAGGCTGATGAAGGTGTTAGAGTTCTTTTGCTTATTTGGAATGATAGAACTTCTGTACCGGAATTCAAGAAAGATGGCTTGATGGCAACTCATGATCAGGAAACTGCTGCTTACTTTAGAAACACAAAGGTGCATTGTGTTTTGTGTCCACGGAACCCGGATGATGGGAGAAGCATAATTCAAGGCCTTCAAATATCAACTATGTTCACTCATCACCAAAAGAGCGTGGTTGTTGATGCACGTGTTGTAGGGTCATCATCACAGAAGCGAAGTCTTGTAAGTTTCATAGGTGGCATTGATCTTTGTGACGGGAGGTATGATACTAGGGACCATCCTTTATTTTCAACTTTGAATACAGTGCATAGAAATGATTTCCATCAACCAAACTTCCCAAACGCTTCTATTGATAAAGGTGGTCCAAGAGAGCCATGGCACGACATTCATTGCAAGCTAGAAGGTCCTATTGCTTGGGATGTTTTGTACAATTTTGAGCAAAGGTGGGAGAAGCAAGTTGGGAAGGAACTGTTGTTCTCGCTTGATGATCTTGATCAGATTCTAGTCCACCCATCTGATGCACAAAAATCAGAACTGGGACAAGAAGACACATGGAATGTTCAGTTGTTTAGATCCATTGATGGTGGTGCTGCTTTTGGCTTTCCCCAAGCCCCGGAAGAAGTTGTTGAATTAGGGCTTGTTACTGGGAAAGACAATATCATTGAGAGAAGTATTCAGGATGCCTACATCCATGCTATTAGGCGTGCAAAAAACTTCGTCTACATTGAGAACCAATACTTCCTGGGGAGCTCATATGGTTGGCGAGCAACTAATGATATCGTGGTTGAGAACATTGGTGCTTTGCATCTTATACCAAAAGAGTTGACATTGAAGATTGTAAGCAAGATTGAAGCAAAAGAGAGGTTTTCTGTGTACATAGTGATCCCTATGTGGCCTGAAGGTGTACCTGAAAGTGATTCGGTTCAAGCAATATTAGATTGGCAGAGAAGAACCATTCAGATGATGTATTCTGACATTGCTGATGCCTTAGTAAAAATGGGCATTCAAGCAAATCCTCGAGATTATTTGACATTTTTTTGCCTCGGCAAAAGGGAGCACAAGAAACCCGGAGAGTATACTCCTCCACAGGAACCAGAGTCTGAGAGTGACTATAGAAGAGCACAAAATTCTAGGAGGTTCATGATCTATGTTCATTCCAAAATGATGATAGTTGATGACGAATACATAATTGTTGGCTCTGCTAACATAAATCAAAGATCAATGGAGGGTGCAAGAGACACTGAGATTGCAATGGGTGCATTCCAACCACGTCATCTAGCATGGAATGGGAGAGCCAGAGGGGAGATATATAGATTCCGACGTGCACTATGGTATGAGCATCTTGGGGACCATGGTTTTGACTCAAAAATCTTCGACAATCCAGAACATTTGGAGTGCATAGATCTTGTGAATAGGCTTGGTGAGGAGAACTGGGACATATACTCAAAGGAAACATTTGATGAAGTTCGACCCTTTCACCACCTCATGCGCTACCCTATACATGTAGCCCTCGATGGAGCCATAACAACTCTTCCGGGGTTCCAATATTTTCCTGACACCAAGGCTCGGATTTTGGGTTGCTACTCAACTTTCCTTCCTTCAATTCTCACCACCTAG 2409 0.428 MPELLHGILKVTIFEVDRLHTGCHLDFCQQIVGTRLYATVDLDKARVGRTRMIGNQPSHPKWNESFEIYCAHHISNIIFTVKDGNPIGATLIGRAYVPVEQVRKGPIVKRWVEILDEEDHRPVPGHSKIRVSMQFNSVMQDRTCSWSQGIRMPFSGVPRTFFNQREGCHVTLYQDAHAPRGVGVVPYIPISEGKDYLPARCWEDIYTAIVEAKYFIYIAGWSVYTEIALVRDKEESNITLGELLKKKADEGVRVLLLIWNDRTSVPEFKKDGLMATHDQETAAYFRNTKVHCVLCPRNPDDGRSIIQGLQISTMFTHHQKSVVVDARVVGSSSQKRSLVSFIGGIDLCDGRYDTRDHPLFSTLNTVHRNDFHQPNFPNASIDKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKELLFSLDDLDQILVHPSDAQKSELGQEDTWNVQLFRSIDGGAAFGFPQAPEEVVELGLVTGKDNIIERSIQDAYIHAIRRAKNFVYIENQYFLGSSYGWRATNDIVVENIGALHLIPKELTLKIVSKIEAKERFSVYIVIPMWPEGVPESDSVQAILDWQRRTIQMMYSDIADALVKMGIQANPRDYLTFFCLGKREHKKPGEYTPPQEPESESDYRRAQNSRRFMIYVHSKMMIVDDEYIIVGSANINQRSMEGARDTEIAMGAFQPRHLAWNGRARGEIYRFRRALWYEHLGDHGFDSKIFDNPEHLECIDLVNRLGEENWDIYSKETFDEVRPFHHLMRYPIHVALDGAITTLPGFQYFPDTKARILGCYSTFLPSILTT* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01888 802 Pfam C2 domain 8 113 IPR000008 -
Lapu9g01888 802 PANTHER PHOSPHOLIPASE D 4 790 IPR015679 -
Lapu9g01888 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 313 351 IPR001736 GO:0003824
Lapu9g01888 802 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 644 671 IPR001736 GO:0003824
Lapu9g01888 802 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Lapu9g01888 802 Gene3D C2 domain 5 145 IPR035892 -
Lapu9g01888 802 SUPERFAMILY Phospholipase D/nuclease 486 713 - -
Lapu9g01888 802 CDD C2_plant_PLD 4 135 - -
Lapu9g01888 802 SMART C2_3c 8 111 IPR000008 -
Lapu9g01888 802 Gene3D Endonuclease Chain A 465 687 - -
Lapu9g01888 802 Pfam Phospholipase D Active site motif 645 671 IPR001736 GO:0003824
Lapu9g01888 802 Pfam Phospholipase D Active site motif 313 351 IPR001736 GO:0003824
Lapu9g01888 802 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 136 IPR035892 -
Lapu9g01888 802 Pfam Phospholipase D C terminal 720 791 IPR024632 -
Lapu9g01888 802 PIRSF PLD_plant 1 802 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lapu9g01888 802 Gene3D Endonuclease Chain A 192 438 - -
Lapu9g01888 802 SMART pld_4 644 671 IPR001736 GO:0003824
Lapu9g01888 802 SMART pld_4 313 351 IPR001736 GO:0003824
Lapu9g01888 802 SUPERFAMILY Phospholipase D/nuclease 153 423 - -
Lapu9g01888 802 FunFam Phospholipase D delta 192 431 - -
Lapu9g01888 802 FunFam Phospholipase D 456 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01888 Lapu-Chr9 33683634 33687751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01888 4 802 Phospholipase D Gene Family (Wang group) AT3G15730 63.814 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01888 K01115 - gmx:100794115 1394.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01888 9 33683634 33687751 Lapu10g00620 10 8324641 8329437 ECH
Lapu9g01888 9 33683634 33687751 Lapu9g01888 9 33683634 33687751 ECH