Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01886 ATGGTACAAGCCAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCTTTACTCAAGAGAAGGGTGTGGCTAGGGACATTTGAGACCGCTGAGGCTGCAGCAAGGGCTTATGACCAAGCAGCCATTTTGATGAATGGTCAGAATGCCAAGACTAACTTCCCCACCTCAAAGAACCAGGCTGAAGCTGATGCCGCCGCCGCCACCACCACCTCTTCTGTTGCTGCCGGTGCTGCTCATCATGACAACACTTTCTTATCTCCCAAAGCTCTTTCAGAACTCCTCAGCACAAAGCTCAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTGAGGCTAGATGCTGACAATTCCCACATTGGAGTGTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTGGAGCTTGGGAAGAAACAGACCGGGGCTGAATCAGCATGGTCGCCAAACAGTAGTACTAATGACACTGCTGGAAACAATGAAGTTGTAGTAGTAGAAGAAGAAGAGGAGGAGGAGGAGGAGGATAGACTCGCTTTGCAGATGATCGAAGAGCTACTCAACTGGAACTAG 615 0.5138 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEADAAAATTTSSVAAGAAHHDNTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQTGAESAWSPNSSTNDTAGNNEVVVVEEEEEEEEEDRLALQMIEELLNWN* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01886 204 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Lapu9g01886 204 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lapu9g01886 204 MobiDBLite consensus disorder prediction 156 175 - -
Lapu9g01886 204 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lapu9g01886 204 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lapu9g01886 204 Coils Coil 180 200 - -
Lapu9g01886 204 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lapu9g01886 204 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Lapu9g01886 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 165 - -
Lapu9g01886 204 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lapu9g01886 204 MobiDBLite consensus disorder prediction 158 175 - -
Lapu9g01886 204 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lapu9g01886 204 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01886 Lapu-Chr9 33662918 33664181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01886 1 203 AP2-EREBP Transcription Factor Family AT5G25390 58.128 3.73e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g01886 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01886 - - gmx:100806821 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01886 9 33662918 33664181 Lapu9g01886 9 33662918 33664181 ECH
Lapu3g00842 3 9074087 9075341 Lapu9g01886 9 33662918 33664181 ECH