Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01884 ATGGGAGAAACCAAGGACGATACATACGAGGAAGAGCTTATTGACTACGAGGAGGAAGAAGACAAGGCTCCCGACTCCGTCGGCGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCCGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGTATCCCTCAAGCAATTCTTGGAATGGATGTAATTTGCCAAGCGAAATCTGGAATGGGAAAGACTGCTGTTTTTGTTCTCTCGACTCTGCAGCAGATTGATCCCGTTCCTGGCCAAGTTTCTGCTCTTGTTCTGTGCCATACAAGAGAACTAGCATACCAGATATGCCATGAGTTCGAGAGATTCAGTACCTATTTACCCGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTCGGAACACCTGGAAGAATACTAGCATTGACTAGGGATAAGGATCTTTCTTTGAAGAATGTGAGACATTTCATATTAGATGAATGCGACAAGATGCTGGAATCACTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCCGCAACACTCAGCAAGGAAATTCGTCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTTATCTTTGTTAAAAGTGTCAGTAGAGCAGCCGAGCTGGACAAACTGCTTGTGGAATGCAACTTTCCTTCTATATGCATCCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAAGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGACATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCTGACACATACTTGCACAGGGTTGGTCGGGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCTTGTTCTACTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTGGATATAAAACAGCTGCCTGAGCAGATTGATACCTCAACTTATAGTATGTGTTTTTAA 1287 0.4258 MGETKDDTYEEELIDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYSMCF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01884 428 CDD DEADc_DDX39 45 252 - -
Lapu9g01884 428 Gene3D - 42 258 IPR027417 -
Lapu9g01884 428 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Lapu9g01884 428 MobiDBLite consensus disorder prediction 1 22 - -
Lapu9g01884 428 SMART helicmild6 302 383 IPR001650 -
Lapu9g01884 428 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Lapu9g01884 428 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 401 - -
Lapu9g01884 428 Gene3D - 259 427 IPR027417 -
Lapu9g01884 428 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Lapu9g01884 428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 397 IPR027417 -
Lapu9g01884 428 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Lapu9g01884 428 SMART ultradead3 65 266 IPR014001 -
Lapu9g01884 428 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Lapu9g01884 428 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Lapu9g01884 428 CDD SF2_C_DEAD 263 392 - -
Lapu9g01884 428 MobiDBLite consensus disorder prediction 1 30 - -
Lapu9g01884 428 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01884 Lapu-Chr9 33627764 33634824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01884 22 424 Eukaryotic Initiation Factors Gene Family AT5G11200 83.784 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01884 K12812 - gmx:100808957 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01884 9 33627764 33634824 Lapu9g01884 9 33627764 33634824 ECH
Lapu9g01884 9 33627764 33634824 Lapu8g00613 8 23756864 23767078 ECH
Lapu8g00613 8 23756864 23767078 Lapu9g01884 9 33627764 33634824 PCT