Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01854 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACCAACGAGAAGCACTCGGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAACAGCAGCAACCACAATCCCAGCAGTCACAACATCAACAACAGCAACAACAACAACACATGCAGATGCAACAGCTCCTTTTGCAGAGAGCGCAGCAACAACAACAGCAACAACAACAACAACAACAACAACAACAGCAACATCAACAACAACAACAGCAACAACAACAACATCAGCAGCAGCAACAGCCACAACCACAACAACAGCAAAGCAGGGATAGGGCTCATCTTTTAAATGGTAGCGCAAATGGGTTGGTTGGAAACCCTGGAACTGCAAATGCGCTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCGCTTCAAAGGGACTCGTTAGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTAGACCCAAATCATGCATCAATATTAAAGTCGGCTGCAGCTCCTGGCCAACCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAGGACGTACTCAGCAATTGCCAGGGTCGTCTATGGATATGAAGGGCGAGATTAATCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAGAGGGTGGCCACTCACAGGTTTGGAGCAACTGCGCACTGGTATACTCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAACATTTTCATCAACTCCAAGTGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAAAATTTGGCATCACCATCTGCAACTGAAGAAAGTAGAAGACTAAGAATGCTATTGAATAATAGGGGTATTGGTCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCCCCTATTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATTCTAATGAAGGTGAAACTGGCTCAGTTACAGCAGCAACAACAGTCAAGTTCCAATGCACAGCAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAAATTGGGAGGAAGAGAAAGCAGCCTGGATCCTCCTCAGGTCCTGCCAATAGTTCAGGCACAGCAAATACTACAGGTCCGTCACCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCTCTTATGATGTTTGGCACTGATGGAACTGGAACCCTTACATCATCTTCCAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTCGAGTCTTTTTTGTCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACGAGTAAAGTTGCCTGTTGCCATTTCTCATCCGATGGGAAACTACTTGCAAGTGGTGGGCATGACAAAAAGGTTGTTTTATGGTACACGGATTCTCTTAAACAAAAAGCTACACTTGAAGAACATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCGCTACGCACCTTCACTGGACATTCTACAACTGTTATGTCACTAGATTTTCATCCAAATAAGGATGACCTCATCTGCTCATGTGATGGTGATGGCGAGATACGATATTGGAGTATAAATAATGGCAGTTGTGCTAGAGTCTGGAAGGGTGGTACCACCCAGATGAGATTTCAGCCTCGTCTAGGCAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCCTGCCGATATTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGAGTCTTCGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAATAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTGGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGCCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCGTCTGCCAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2697 0.4531 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQSQQSQHQQQQQQQHMQMQQLLLQRAQQQQQQQQQQQQQQQQHQQQQQQQQQHQQQQQPQPQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQGRTQQLPGSSMDMKGEINPRAAGPEGSLMGMPGSNQGSNNLTLRGWPLTGLEQLRTGILQQQKPFMQAPQHFHQLQVLTPQHQQQLMLAQNLASPSATEESRRLRMLLNNRGIGLNKDGLSNPVGDVVSNVGSPIQGGGPPFPRGDTDILMKVKLAQLQQQQQSSSNAQQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGTGTLTSSSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLRSGSEGECVHELSCNGNKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLPAHDGLITALAVSTVNGLVASASHDKFLKLWK* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 691 IPR001680 GO:0005515
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 781 817 - -
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 866 898 IPR001680 GO:0005515
Lapu9g01854 898 Pfam WD domain, G-beta repeat 861 898 IPR001680 GO:0005515
Lapu9g01854 898 Pfam WD domain, G-beta repeat 695 732 IPR001680 GO:0005515
Lapu9g01854 898 Pfam WD domain, G-beta repeat 777 812 IPR001680 GO:0005515
Lapu9g01854 898 Pfam WD domain, G-beta repeat 653 688 IPR001680 GO:0005515
Lapu9g01854 898 Pfam WD domain, G-beta repeat 616 645 IPR001680 GO:0005515
Lapu9g01854 898 Coils Coil 111 151 - -
Lapu9g01854 898 FunFam Transcriptional corepressor LEUNIG 745 898 - -
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 614 645 - -
Lapu9g01854 898 MobiDBLite consensus disorder prediction 412 449 - -
Lapu9g01854 898 CDD WD40 614 898 - -
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 821 IPR001680 GO:0005515
Lapu9g01854 898 ProSitePatterns Trp-Asp (WD) repeats signature. 675 689 IPR019775 -
Lapu9g01854 898 SMART Lish 8 40 IPR006594 GO:0005515
Lapu9g01854 898 FunFam Transcriptional corepressor LEUNIG 593 744 - -
Lapu9g01854 898 MobiDBLite consensus disorder prediction 274 293 - -
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 866 898 - -
Lapu9g01854 898 MobiDBLite consensus disorder prediction 412 539 - -
Lapu9g01854 898 SUPERFAMILY WD40 repeat-like 612 898 IPR036322 GO:0005515
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 655 IPR001680 GO:0005515
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 691 - -
Lapu9g01854 898 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 898 - -
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 699 737 - -
Lapu9g01854 898 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lapu9g01854 898 SMART WD40_4 774 812 IPR001680 GO:0005515
Lapu9g01854 898 SMART WD40_4 859 898 IPR001680 GO:0005515
Lapu9g01854 898 SMART WD40_4 607 646 IPR001680 GO:0005515
Lapu9g01854 898 SMART WD40_4 649 688 IPR001680 GO:0005515
Lapu9g01854 898 SMART WD40_4 692 732 IPR001680 GO:0005515
Lapu9g01854 898 SMART WD40_4 735 771 IPR001680 GO:0005515
Lapu9g01854 898 SMART WD40_4 818 857 IPR001680 GO:0005515
Lapu9g01854 898 MobiDBLite consensus disorder prediction 460 520 - -
Lapu9g01854 898 Pfam LisH 10 36 IPR006594 GO:0005515
Lapu9g01854 898 Gene3D - 745 898 IPR015943 GO:0005515
Lapu9g01854 898 Gene3D - 593 744 IPR015943 GO:0005515
Lapu9g01854 898 Coils Coil 412 432 - -
Lapu9g01854 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 699 741 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01854 Lapu-Chr9 33398855 33408419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01854 693 897 Miscellaneous Gene Families AT5G08390 24.286 7.72e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lapu9g01854 WD40 0.018 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01854 - - gmx:100816263 1332.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01854 9 33398855 33408419 Lapu9g01854 9 33398855 33408419 ECH
Lapu8g00583 8 23318917 23338053 Lapu9g01854 9 33398855 33408419 PCT