Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01837 ATGCACTCCAAATCGGCGCAGTCGTCGTTTCGGGATCGGACGCATGAATTTCATAGCATTGCGGAGAGGTTGAAGAAGCCGGGATCAGCGCCGAATGGACAAAGCAGCAATTTATCCAGAGTGGAGGAACAGCGATCCGCAATTGCAAATCAATCAGAGTTCAACAGAAGAGCTTCCAAGATTGGCTTCGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTTGCCAAGTTGGCTAAGAGGACTTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACGGGGGTTATTAAGCAAGATATTACTGCGTTAAACTCTGCGGTTGTGGATCTTCAGTTGCTTTGCAACTCCAGGAACGAGAGTGGGAACGCTTCCACCGACACCACTAGCCATTCAACCACGGTGGTTGATGACCTCAAGACGCGGTTGATGGGCGCCACCAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGACAGCTGTTTTCGGCCTCTGGTTCTAAGGATTCTGCAAATCCTTTTGTCCGGCAACGGCCGTTGGCTACCAGGTCGGCTGCTAGTAGTTCTAATGCCCCTGCTCCTCCCTGGGCTAGTGGGTCATCTTCATCTGAGTTGTTTGCTAAAAAACAGATGGATGGGGAGAGTCAACCATTGCTGCAACAGCAGCAACAACAGGTAGCCCCATTGCAAGATAGCTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAACATCTTTAATCAACTTGCAACACTTGTTTCCCAACAAGGAGAAGTTGCCATCAGGATTGATGAAAACATGGATGATACATTAGCAAACGTAGAGGGGGCGCAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1005 0.4647 MHSKSAQSSFRDRTHEFHSIAERLKKPGSAPNGQSSNLSRVEEQRSAIANQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNASTDTTSHSTTVVDDLKTRLMGATKEFKDVLTMRTENLKVHENRRQLFSASGSKDSANPFVRQRPLATRSAASSSNAPAPPWASGSSSSELFAKKQMDGESQPLLQQQQQQVAPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01837 334 Gene3D - 48 297 - -
Lapu9g01837 334 ProSitePatterns Syntaxin / epimorphin family signature. 248 287 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu9g01837 334 CDD SNARE_syntaxin5 245 323 - -
Lapu9g01837 334 SMART tSNARE_6 237 304 IPR000727 -
Lapu9g01837 334 MobiDBLite consensus disorder prediction 1 44 - -
Lapu9g01837 334 MobiDBLite consensus disorder prediction 192 215 - -
Lapu9g01837 334 MobiDBLite consensus disorder prediction 29 44 - -
Lapu9g01837 334 MobiDBLite consensus disorder prediction 190 215 - -
Lapu9g01837 334 MobiDBLite consensus disorder prediction 1 23 - -
Lapu9g01837 334 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Lapu9g01837 334 Pfam SNARE domain 279 330 IPR000727 -
Lapu9g01837 334 SUPERFAMILY t-snare proteins 51 297 IPR010989 GO:0016020|GO:0016192
Lapu9g01837 334 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
Lapu9g01837 334 PANTHER SYNTAXIN 47 326 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01837 Lapu-Chr9 33233441 33241005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01837 1 334 SNARE and Associated Proteins AT3G24350 63.361 2.03e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01837 K08490 - gmx:100777961 511.916