Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01836 ATGCACGTCAAATCGGCGCAGTCGTCGTTGCGGGATCGGACGCATGAATTCCAAAGCATCACCGAGAGGTTGAAGAAGTCTGGATCAGGGCCCACAGGGCCCAGCAGTAGCAGTTATTCCAGATCGGAGGAACAGCGGTCGGCGATCGCAAATCAATCGGATTTCAATAGAAGGGCCTCCAAAATCGGGTTCGGAATTCACCAAACGTCTCAGAAACTCGCAAAGCTCGCCAAGTTGGCAAAAAGGACTTCGGTTTTTGATGACCCTACAATGGAAATTCAAGAGCTTACTGGTGTTATTAAGCAGGATATCACTGCTTTAAACTCTGCGGTGGTGGATCTCCAGTTGCTATGTAACTCTAGGAATGAGAGTGGAAATGTTTCTGTGGACACAACGAGCCATTCGAGTACGGTGGTGGATGACTTGAAGACAAGGTTGATGAGCGCCACCAAAGAGTTTAAGGATGTTCTCACCATGAGAACTGAGAACATGAAAGTGCACGAGAATAGAAGACAATTGTTTTCGTCTTCTGCTTCTAAGGATTCAGCAAATCCTTTCATCCGGCAACGGCCGTTGGCTGCTAGGTCGGCATCTAGTAGTTCTAATGCCCCTGCTCCTCCCTGGGCTAATGAGTCGCCATCTTCATCTCAGGTGTTTCCCAAGAAGCAAATGGACACAGAGAGTCAACCATTGTTGCAGCAGCAACAACAACAGCAGGATGTAGTTCCATTGCAAGACACTTACATGCAAAGCAGAACAGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTTAGCAGCATTTTTAATCAGCTAGCGACACTAGTTTCCCAACAAGGAGAGATTGCCATCAGGATCGATGAAAACATGGATGATACATTGTCAAACGTAGAGGGAGCACAAGGGGCTTTGTTGAAATATCTGAACAGCATATCTTCTAATCGGTGGTTGATGATCAAAATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1017 0.4523 MHVKSAQSSLRDRTHEFQSITERLKKSGSGPTGPSSSSYSRSEEQRSAIANQSDFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSVDTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLAARSASSSSNAPAPPWANESPSSSQVFPKKQMDTESQPLLQQQQQQQDVVPLQDTYMQSRTEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01836 338 SUPERFAMILY t-snare proteins 52 301 IPR010989 GO:0016020|GO:0016192
Lapu9g01836 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Lapu9g01836 338 MobiDBLite consensus disorder prediction 1 22 - -
Lapu9g01836 338 MobiDBLite consensus disorder prediction 23 53 - -
Lapu9g01836 338 CDD SNARE_syntaxin5 249 327 - -
Lapu9g01836 338 Gene3D - 48 301 - -
Lapu9g01836 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Lapu9g01836 338 SMART tSNARE_6 241 308 IPR000727 -
Lapu9g01836 338 MobiDBLite consensus disorder prediction 1 53 - -
Lapu9g01836 338 MobiDBLite consensus disorder prediction 193 237 - -
Lapu9g01836 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu9g01836 338 PANTHER SYNTAXIN 50 330 IPR045242 -
Lapu9g01836 338 MobiDBLite consensus disorder prediction 191 237 - -
Lapu9g01836 338 Pfam SNARE domain 282 334 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01836 Lapu-Chr9 33227289 33232451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01836 1 338 SNARE and Associated Proteins AT3G24350 63.912 7.48e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01836 K08490 - gmx:100811494 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01836 9 33227289 33232451 Lapu9g01836 9 33227289 33232451 ECH