Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01832 ATGGGAGAGGTGGCAGTATTGCACTCTGAGCCTCTGCAGGTTGACGGCAAGGACATGAAGCATATGACTGAGAAAGATGTGTATAATCATCTACCATCAAACGAAGAGCAAATACTTGGAGAAGAATCAAGTCAATCAACAGATCACGAAAAGATCAATAATTTGCGTGAGAGAGGATATATGGAATACGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCTCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAACGCGGAAAAAAATAGCATGAACATTGATCTGAAGCACAGACACGATATGCCTCGCCACCAAGTTAAACAGGTTATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTTCTTCTGTGGGTCGTGTAAACTCTTTGATGATGATGTATCTAAGCAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACGGGAGGATGCGAAAATTTCTTTCACTGCTACAAATGTGGTTGTTGCTACCCAACTCAGATGCAAAACGGTCACCCTTGTGTGGAAGGAGCAATGCATCACAATTGCCCCATTTGTTTCGAGTATTTGTTTGAATCTGTGAGCGAAGTCCTTGTTTTGGTCTGCGGACATACTATACATATGAGCTGCCTGAAGGAAATGAGGAATCATTTCCAGTATGCATGCCCTCTCTGCTCGAGGACAGTTTGTGACATGTCAACTGTTTGGAAGAATCTCGACTTGGAGATTGCTGCTACACCAATGCCTGAACCATATCGAAACAAAATGATTTGGATCCTTTGCAATGATTGTTGTAAAACTTCTCACGTCCAGTTCCATCTTATTGCTCAAAAGTGCTTGAACTGCAACTCCTACAACACACGAGAAACAAGAGGCTGA 933 0.4287 MGEVAVLHSEPLQVDGKDMKHMTEKDVYNHLPSNEEQILGEESSQSTDHEKINNLRERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNAEKNSMNIDLKHRHDMPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKFFCGSCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCYPTQMQNGHPCVEGAMHHNCPICFEYLFESVSEVLVLVCGHTIHMSCLKEMRNHFQYACPLCSRTVCDMSTVWKNLDLEIAATPMPEPYRNKMIWILCNDCCKTSHVQFHLIAQKCLNCNSYNTRETRG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01832 310 SUPERFAMILY RING/U-box 199 251 - -
Lapu9g01832 310 SUPERFAMILY Zinc hairpin stack 137 194 IPR037275 -
Lapu9g01832 310 Pfam CHY zinc finger 65 146 IPR008913 GO:0008270
Lapu9g01832 310 Pfam Zinc finger, C3HC4 type (RING finger) 201 243 IPR018957 GO:0046872
Lapu9g01832 310 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 34 309 - -
Lapu9g01832 310 Gene3D - 272 310 - -
Lapu9g01832 310 ProSiteProfiles Zinc finger CTCHY-type profile. 136 200 IPR017921 -
Lapu9g01832 310 SUPERFAMILY CHY zinc finger-like 62 136 IPR037274 GO:0008270
Lapu9g01832 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 263 IPR013083 -
Lapu9g01832 310 ProSiteProfiles Zinc finger RING-type profile. 201 244 IPR001841 -
Lapu9g01832 310 ProSiteProfiles Zinc finger CHY-type profile. 58 134 IPR008913 GO:0008270
Lapu9g01832 310 Pfam Zinc-ribbon 248 306 IPR039512 -
Lapu9g01832 310 SMART ring_2 201 243 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01832 Lapu-Chr9 33183312 33195296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01832 63 306 C2H2 Transcription Factor Family AT3G18290 40.000 5.97e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01832 K10144 - gmx:100812023 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01832 9 33183312 33195296 Lapu9g01832 9 33183312 33195296 ECH
Lapu8g00565 8 23030015 23037049 Lapu9g01832 9 33183312 33195296 PCT