Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01829 ATGTCGATGTGGTCTCTAGGTAGAAGATGCTCAAGTAGCGAAATGGCTTCGGTTTCAAGTACCATCTTTGCAGCATTTGGAACCCCCATCTTTGATATACAAGGTTACTCCAACCTAAAGAAATACGTCATTGCTCCCCACGACCGTAGATATCAATTGTGGCAAACGTTCCTAGTGGCTTTGGTAGTGTACTCTGCATGGGCATCGCCATTCGAGCTAGCTTTCAGAGAACTGTTAGTTGGGTCGTTGTTGACCGTTGATCTCCTTGTTGATGCCTTCTTTGCGGTTGATATAATCCTTACTTTCTTCGTGGCTTACTTGGATACGTCAACTTATCTCTTCGTTGACGATCATAAGAAGATTGCTCTCAGGTACGTCAAAAAGTTGCAGTTCACCATGGATCTTGCCTCCACTCTGCCAATTGAGCAGATATATAAAATTCTGACGGGAAAGCCAACCAAAAGCGAGGTATTTGGTTTCCTAATTATGCTAAGACTCTGGCGATTGAGGCGTGTTAGCGAACTCTTCGAAAGGCTAGAAAAAGACATACGAATAAACTATTCGGCAACAAGATTTTGCAAACTGATATGCGTTACAGTATTTGCGGCGCACTTCGCAGGCTGCATGTTTTTTTGGTTGGCTGTCCAGCACAAAACACCGAAAAACACATGGATCGGGAACAAAACACAGGATTTTCATGAATTGGGAATCGGGTTGGGTTACACTTATTCTGTGTACTGGTCTGTTGCAACCCTTACCACTGTTGGATATGGAGATTTTTATGCAGTGAATTTAACGGAGATGCTTTTCTGTATTTTATACATGCTCTTTAACATCGGCCTCGGTGCATATACAATTGGAAACATGACAAATTTGTTGGTTCATAGTTCTGTCGGAACCTCTGCCGTGAGGGACGCCTTCAACAAAATATTACAATATGCAAACAAAAATAGACTCCCGAGAGGATTAAAGGAGCAAATATTGGCACACATGCAATTGAAGTTTAAGACAGCAGAGTTGCAGCAAGAAGTGCTACAATACCTACCTAAAACTATAAGATCCAGTATTGCTCAGCATCTTTTCCACAACATTCTTGAAACAGCATATTTATTTAAAGGAGTGTCAGAAACGAAGGCAGAATACTACCCATCTAAGGTTGACATTATCCTGCAAAATGAGATGTCAAAATATTTCTACATCTTGGTATCTGGGTCACTGGATGTGCTGACATACAATAATGGATCCGAACAGGTGTTATTCGAACTTGAATCTGGAGGCGTGGCAGGAGAAATAGGAGTGATGTTTAATATTCCACAACCTTTTACTGTCAGAAGTAGAGGGCTCTCCCAGGTCATACGAATCAATCATCACCACTTCAAGCAGATGGTGCAACCATTTAGTGACGATGCGAAGGCAATCATGTACAACTTTATTCAGTATTTGAAGGGCCTCAAATGCAAGGTGCTAGAAGAAATATCATATGTAACAGAATTGCTGTGTGACCTTTATGATGAGCATCTGAGACAAAATGAGGGTACACTCGATGAAGTTTCAAGATATCAAGATGCATATAAAGAAGGAAAAACAGGAACTTCCAAACCACTGTCAAGCCCAGTCCCTGTCAGAGTTACCATCCACGGACACCATCCCAATGAAAACAAAATGGGAAATGGAACAACTCCAAAGCTCATACTTCTCCCAAATTCGGTAGAAGATATTTTCAGAGTTGCAGAGACAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCTCAGAAGTAGAACAATTAAACGCGATACGGGAGAATGATGAGTTATATATCCTCTAA 1836 0.4129 MSMWSLGRRCSSSEMASVSSTIFAAFGTPIFDIQGYSNLKKYVIAPHDRRYQLWQTFLVALVVYSAWASPFELAFRELLVGSLLTVDLLVDAFFAVDIILTFFVAYLDTSTYLFVDDHKKIALRYVKKLQFTMDLASTLPIEQIYKILTGKPTKSEVFGFLIMLRLWRLRRVSELFERLEKDIRINYSATRFCKLICVTVFAAHFAGCMFFWLAVQHKTPKNTWIGNKTQDFHELGIGLGYTYSVYWSVATLTTVGYGDFYAVNLTEMLFCILYMLFNIGLGAYTIGNMTNLLVHSSVGTSAVRDAFNKILQYANKNRLPRGLKEQILAHMQLKFKTAELQQEVLQYLPKTIRSSIAQHLFHNILETAYLFKGVSETKAEYYPSKVDIILQNEMSKYFYILVSGSLDVLTYNNGSEQVLFELESGGVAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMVQPFSDDAKAIMYNFIQYLKGLKCKVLEEISYVTELLCDLYDEHLRQNEGTLDEVSRYQDAYKEGKTGTSKPLSSPVPVRVTIHGHHPNENKMGNGTTPKLILLPNSVEDIFRVAETKFGKRGSKILMADGSEVEQLNAIRENDELYIL* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01829 611 Gene3D - 52 295 - -
Lapu9g01829 611 FunFam Potassium channel KAT2 350 485 - -
Lapu9g01829 611 SUPERFAMILY cAMP-binding domain-like 303 481 IPR018490 -
Lapu9g01829 611 CDD CAP_ED 374 474 IPR000595 -
Lapu9g01829 611 Gene3D Jelly Rolls 337 483 IPR014710 -
Lapu9g01829 611 SMART cnmp_10 361 478 IPR000595 -
Lapu9g01829 611 Pfam Cyclic nucleotide-binding domain 382 464 IPR000595 -
Lapu9g01829 611 SUPERFAMILY Voltage-gated potassium channels 46 294 - -
Lapu9g01829 611 PANTHER POTASSIUM CHANNEL AKT1 16 497 IPR045319 GO:0005249|GO:0006813
Lapu9g01829 611 PRINTS EAG/ELK/ERG potassium channel family signature 241 258 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01829 611 PRINTS EAG/ELK/ERG potassium channel family signature 267 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01829 611 PRINTS EAG/ELK/ERG potassium channel family signature 87 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01829 611 PRINTS EAG/ELK/ERG potassium channel family signature 98 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01829 611 FunFam Potassium channel KAT3 53 295 - -
Lapu9g01829 611 Pfam Ion transport protein 52 292 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu9g01829 611 ProSiteProfiles KHA domain profile. 542 611 IPR021789 -
Lapu9g01829 611 ProSiteProfiles cAMP/cGMP binding motif profile. 361 480 IPR000595 -
Lapu9g01829 611 Pfam KHA, dimerisation domain of potassium ion channel 542 610 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01829 Lapu-Chr9 33161117 33168250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01829 1 610 Ion Channels AT4G32650 54.574 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01829 K21867 - gmx:100794620 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01829 9 33161117 33168250 Lapu9g01829 9 33161117 33168250 ECH