Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01811 ATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGATGGTAGTCCCTAGAAAGGGGGTGGGTCATGTGTTTAGAGACACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACCTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCAATCCAATCTTCTTCTGCTGGCAAGGAAGCAGTTGGAAGCTCCTCTAGAACCTTTCCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAATCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACATGATGAATCAGAAGTTTCAAAGCTCGCCCCTGCCCCTGAAAAACGTCAGACAGGGCTCCAAGCTGAAATGGAAAATACTGTGTCTCGTAATGTCATGATGGAAGTAGGAAGCTCAAGCGTAGTATCCAATTCAAGATCTCGGAGGAACTTTCATCCAAAGCCTGGAATACGTGGTCAAGAAATTAAAAATACTGGTCCAGTGATGCGTGCTGGTGCCAGTAGGTATGGGTTTAGGAACCTCAAATGCAACTCTATTTCTGATGTCCTCCCTGCTGGCTGTTCATCTTCAGATTCAACCCTTAACAGAAGGAAGGACATGATAAAAAAGAGGAATTGTGAGGGGGAAGGTAGTTCCTCTGCTAGAGGGAAGAAAATGAGTGGGACTTCATTAGAAGGACGGAGTTCTGGTTCCAGAAATGGCATATCTATTTCTGATTCAAGAATATCTAGGAATACTCCTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAAACAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCCGTGTCACCCAATGAGTCCTCTGTCATGATACCTTCTTTGCCTCATTCTGGTGGTCGTAATGCTCCTAGTGTATCACATCGTACTTCTGTAGATATTTCCTTAAGTTGTCCTAGCTCTCACAGTAGACCAGGTACTGGCAGTGAGGAGTTATATGGTGTTATGCCCGTATCTCCTTCAGAATATGGCCTCTCTCATTCTATAATGAATCTGGATAGCTTCCGTCGACGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACGCATGAGCAAATTCGTTTACTGGAATCGAACTTGTTCCTTACTGGACTTAACTTCTACGATCCACATAGAGAAATGCGATTGGACATTGATAACATGTCATATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCAGAATGCCTAAAGAAAAGTTTCTTCCAGTCCTCACCCTCTGAAAATGCAGTAGACAGCTGCAATGAAGCCAAGGATGACACCAAATGCAGCATTTGTCAGGAGGAATATGTGGTTGCGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAATGGCTACGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGTACCGTCAAATTCATCCACATCTCAATGA 1632 0.4436 MDEYSGKRAIDGMVVPRKGVGHVFRDTANARDRNGQVCSRLTCSSRVNTSKGAQIGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFPKTSSPGKPLIKPRKKSSSQLETDSSETSSVHDESEVSKLAPAPEKRQTGLQAEMENTVSRNVMMEVGSSSVVSNSRSRRNFHPKPGIRGQEIKNTGPVMRAGASRYGFRNLKCNSISDVLPAGCSSSDSTLNRRKDMIKKRNCEGEGSSSARGKKMSGTSLEGRSSGSRNGISISDSRISRNTPPHRDRSDSNMAPVRTRKTISGHARGRLSSQGNANPVSPNESSVMIPSLPHSGGRNAPSVSHRTSVDISLSCPSSHSRPGTGSEELYGVMPVSPSEYGLSHSIMNLDSFRRRYNVDSIAEVLLALERIEQDVELTHEQIRLLESNLFLTGLNFYDPHREMRLDIDNMSYEQLLALEERMGSVSTALTEEALSECLKKSFFQSSPSENAVDSCNEAKDDTKCSICQEEYVVADELGSLHCEHMYHVVCIQQWLRLKNWCPICKASVVPSNSSTSQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01811 543 MobiDBLite consensus disorder prediction 136 166 - -
Lapu9g01811 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 79 534 IPR045191 GO:0061630
Lapu9g01811 543 MobiDBLite consensus disorder prediction 218 234 - -
Lapu9g01811 543 MobiDBLite consensus disorder prediction 211 356 - -
Lapu9g01811 543 SMART ring_2 490 530 IPR001841 -
Lapu9g01811 543 Coils Coil 394 414 - -
Lapu9g01811 543 MobiDBLite consensus disorder prediction 32 89 - -
Lapu9g01811 543 MobiDBLite consensus disorder prediction 292 350 - -
Lapu9g01811 543 Pfam Ring finger domain 489 531 IPR001841 -
Lapu9g01811 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 537 IPR013083 -
Lapu9g01811 543 MobiDBLite consensus disorder prediction 100 126 - -
Lapu9g01811 543 FunFam E3 ubiquitin-protein ligase arkadia 452 536 - -
Lapu9g01811 543 ProSiteProfiles Zinc finger RING-type profile. 490 531 IPR001841 -
Lapu9g01811 543 SUPERFAMILY RING/U-box 484 537 - -
Lapu9g01811 543 MobiDBLite consensus disorder prediction 26 179 - -
Lapu9g01811 543 MobiDBLite consensus disorder prediction 238 266 - -
Lapu9g01811 543 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01811 Lapu-Chr9 32929446 32932358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01811 376 535 C3H Transcription Factor Family AT2G15530 42.857 1.35e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01811 - - gmx:100787213 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu8g00537 8 22640795 22643511 Lapu9g01811 9 32929446 32932358 PCT