Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01804 ATGGAGCTAAGACATGAGAAGCTTGTGAGGTTCTCCAATGATGGAAAGCAGACTCTTGAACTTCCTTGGGAAAATCTAGACTCTCACAAACACGATGAGAAGGCATTCACAGTTTATCCAGAATGCAAAATGAGTATTGGTGACAAGAACAGAATGAGTATCAGAATTCCCTCGCTTGCAAAGTTTAAGGTTTTCCCAGAAAACCATGAGCCATGGAAGAAGAGAATTCTTGATCCTGGCAGTGATGTAATTTTGGAGTGGAACCGGGCTTTCCTGTTTGCTTGCATTTTGGCACTGTTTGTTGATCCACTGTTTTTCTACCTTCCCTCAGTAGCAAATGATGGGAAATCATCGTGTATGGCTACTGATTTGAATATAGGAATTGTTGTGACATGTTTTCGGACATTTGCTGATGTTTTCTATCTGCTCAACATGGCCATCAAGTTCAGAACTGCCTATGTATCACCGAGTTCTAGGGTGTTTGGAAGGGGTGAGCTTGTTATGGATCCTAGGCTGATTGCAAGGCGATATTTGAGATCAGAGTTCTTCCTAGATCTTGTTGCTACACTACCTCTTCCCCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCACTTGTACTCATTGTTCTGCTTCAATATGTTCCCAGATTATATTTGATTTTCCCATTGAGTTCTCAGATTATTAAAGCCACCGGTGTAGTTACAAAGACAGCTTGGGCAGGGGCTGCTTACAATCTTTTACTTTACATGTTAGCTAGTCATGTGTTGGGAGCATCATGGTATTTGTTATCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAGCCTCCCTGTAAAATGTGCTCTTAAGTACTTAGATTGCAGTACTTTAAACCATGATGATCGCATGAAGTGGGTAAACACTACTTCTGTGTTTGGTAACTGCAATCCTGAAAATAGCACCAATTTCAACTACGGAATTTTTGTAAGTGCAGTGGAAAATAATGTTATCTCCTCTGTGTTTATAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTAAGTTCCTATGGCCAGGGTTTGACCACAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAATGGAGGCTCAAGAGACGTGACACTGAAGAGTGGATGAGCCACCGCCAGCTCCCACAAAATCTGAGAGAGCGTGTCCGAAGATTTGTTCAGTACAAGTGGCTTGCAACTCGCGGGGTTGATGAAGAAACAATCCTACGTGGCCTTCCTATTGACCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCTTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGCGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACGTATATAGTCAGAGAAGGAGACCCGGTCACAGAGATGCTCTTTATCATCAGAGGGAGACTTGAGAGTTCAACCACAAATGGTGGTAGAACTGGTTTCTTCAACTCCATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCATTGCTTCCAAAATCCACCCTCAACTTGCCTTCTTCTACAAGAACAGTTAAAGCCCTTGTAGAAGTTGAAGCCTTTGCACTAAGAGCAGAAGATCTTAAATTTGTGGCTAATCAGTTTAGACGTCTCCACAGCAAGAAGTTACAGCACACTTTCCGTTTCTACTCACACCACTGGAGGACATGGGCAACATGCTTCATTCAGGCTGCATGGCGCCGATTCAAGAAGAGAATGTTTGCGAAGAGCCTTAGCTTGAGGGAATGCCAGTCCTTCAATCACGATGAACAAAATGAAGAAGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTAAAACAAAACCTAGGTGTCACTATATTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGAGTTCAGAAGATCAAGGATGTAGAGCTTCCCAAGTTGCAAAAGCCTGAAGAGCCAGACTTTTCAGTAGAGCCTGATGATGATTAG 2160 0.4282 MELRHEKLVRFSNDGKQTLELPWENLDSHKHDEKAFTVYPECKMSIGDKNRMSIRIPSLAKFKVFPENHEPWKKRILDPGSDVILEWNRAFLFACILALFVDPLFFYLPSVANDGKSSCMATDLNIGIVVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESLPVKCALKYLDCSTLNHDDRMKWVNTTSVFGNCNPENSTNFNYGIFVSAVENNVISSVFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWATCFIQAAWRRFKKRMFAKSLSLRECQSFNHDEQNEEEHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKIKDVELPKLQKPEEPDFSVEPDDD* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01804 719 MobiDBLite consensus disorder prediction 696 719 - -
Lapu9g01804 719 SUPERFAMILY cAMP-binding domain-like 415 607 IPR018490 -
Lapu9g01804 719 MobiDBLite consensus disorder prediction 696 711 - -
Lapu9g01804 719 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Lapu9g01804 719 Pfam Cyclic nucleotide-binding domain 508 596 IPR000595 -
Lapu9g01804 719 Gene3D - 91 411 - -
Lapu9g01804 719 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 712 - -
Lapu9g01804 719 Pfam Ion transport protein 87 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu9g01804 719 SUPERFAMILY Voltage-gated potassium channels 81 407 - -
Lapu9g01804 719 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Lapu9g01804 719 PRINTS EAG/ELK/ERG potassium channel family signature 354 371 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01804 719 PRINTS EAG/ELK/ERG potassium channel family signature 398 407 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01804 719 PRINTS EAG/ELK/ERG potassium channel family signature 380 391 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01804 719 PRINTS EAG/ELK/ERG potassium channel family signature 448 455 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01804 719 PRINTS EAG/ELK/ERG potassium channel family signature 145 154 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu9g01804 719 CDD CAP_ED 485 616 IPR000595 -
Lapu9g01804 719 Gene3D Jelly Rolls 483 603 IPR014710 -
Lapu9g01804 719 Gene3D Helix hairpin bin 413 476 - -
Lapu9g01804 719 SMART cnmp_10 485 616 IPR000595 -
Lapu9g01804 719 ProSiteProfiles cAMP/cGMP binding motif profile. 485 568 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01804 Lapu-Chr9 32853229 32856792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01804 10 715 Ion Channels AT2G24610 70.621 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01804 K05391 - gmx:100803334 1373.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01804 9 32853229 32856792 Lapu9g01804 9 32853229 32856792 ECH