LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu9g01800	ATGTGGTTGCCAAAGAATCGGTCGGATAAAAAGGATGGTGTGAGTGGATTAGTAGGAGTGGCAATTGATAAAGAAAAAGGGAGCCACGCTGCATTCAAATGGGCCGTTGACAATCTCCTCGTCAGAAGTGCAACTGTAGTTCTCATCCATGTCAAGCTTCTCGCACCAACGCTATCTCCATCACCTTCTCTTTTCGCCCCTAAGATAAGTGCTTTCCTTGGTGATGATAGTTCAGTGGCAAGCAAAGAACACGAAGGCCAAAACAAAAATGTTTTCCTCCCATATCGTGTATTATGTACGCGGAAAGATATACAATGCAAGGATGTCCTACTAGAAGATTCAGATATATCCAAAGCTATAACTGAATATGTTTCTCAAACAGGAATTGAGCATCTGGTTCTTGGCTCTTCAGCAAAAACTAGTTTGCTCAAGAGATTCAAGGTATCAGATATTCCAGGAGCAATTTCAAAAGGGGCGCCAGATTTCTGTACTGTCTATGTTATTGCCAAAGGAAAGATTCAAACAATGCGATCTGCTTCTCGTCCACCGCCGCCCATTTTCCCTAACCTGCTCATCAGTCAAGGTAGTGTCAGGTCAAACATTTCAGACCAAAATGTGCAATTGGCTCAAAGCATAAAAGAACAAGAAACTCATTCCTTTGATACTGCATCACAGTATGATGAATCATTCAGGTCACCATTTACTAGGAAACGTTACAATGGCAGACAATACGGGGAAACTCCCAAGTCAGATGCGGACATATCCTTTGTAAGCTCTGGAAGACAAAGCACAGACCGCTTGCCCCCTTCATTGAACTCAGATACCGGAATATCCAACCCTCGGTTATCATATAGCTCAGAGTCAGATGCAAACTTCAGCTTTGAGTCAATGCCATATGGAAGGAAGTCTACGGAAATGAGCACTCCTCGTGAATTCACATCATTATCATTTGAGAGCGACAGCCTATCATCTTCTACATCGCAAGCAGCGGATGAGATGGAGGCTGAAATGAGGAGATTGAAGTTGGAGCTGAAGCAGACCATGGAAATGTATAACACGGCTTGTAAAGAAGCACTCACAGCACAACAGAAGGCAGTGGAACTTCAGCGGTGGAAACTAGAGGAAACGAGGAGATTGGAAGAGGCAAGGATGGCTGAGGAAGCAGCACGGGCAATTGCAGAAAAGGAGAGAGCCAAGTCTAAATTTAAGTGCCATTTGGATCACACACCTGTTGCAGTCAAGGTTCTACGCCCTGATGCACAACAAGGAAGATCACAGTTTAAGCGAGAGGTTGAAGTATTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCCTAGGAGCATGTCCAGAATATGGATGTCTGGTGTATGAGTACATGGCAAATGGAAGCTTGGATGATTGCCTCTTTCGACAAGGCAACGTGGCAAGACTTCCTTGGCAGCTAAGGTTCAAGATAGCAGCTGAAATTGGAACAGGCTTGCTGTTCCTGCACCAGACAAAACCAGAACCTCTGGTGCACAGGGACTTGAAACCAGCCAACATCTTGCTTGACAGAAACTTTGTGGCCAAAATCAGTGATGTGGGTTTGGCCAGGCTAGTTCCACCATCTGTGGCAGACACGGTAACACAATATCACATGACATCCACAGCAGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGAATGTTAGGGGTGAAATCAGACATATACTCCCTTGGGATAATTTTTTTGCAAATTTTGACAGCAAAATCACCTATGGGTTTGACCCATCATGTTGGAAGGGCCATTGAGAAGGGAACTTTAGCTGAGATGTTGGATCCATCAGTCCCCGATTGGCCGCTAGAGGATGCCTTGCAATTTGCTAAGTTGGCAGTGCAGTGTGCTGAATTAAGGCGCAAAGACAGACCTGATCTTGGGAAGGTTATCCTACCAGAACTCAACAGACTAAGAAACCTTGCTGAAGATAGTGATCTTATTTCAGTTTTGGGTAACCCTAGGAATATGCCTCGAGAAAGACAAGTTTCTGTGGTACTGGTAAGTTCCTATGTTGTTTCATGA	2070	0.4473	MWLPKNRSDKKDGVSGLVGVAIDKEKGSHAAFKWAVDNLLVRSATVVLIHVKLLAPTLSPSPSLFAPKISAFLGDDSSVASKEHEGQNKNVFLPYRVLCTRKDIQCKDVLLEDSDISKAITEYVSQTGIEHLVLGSSAKTSLLKRFKVSDIPGAISKGAPDFCTVYVIAKGKIQTMRSASRPPPPIFPNLLISQGSVRSNISDQNVQLAQSIKEQETHSFDTASQYDESFRSPFTRKRYNGRQYGETPKSDADISFVSSGRQSTDRLPPSLNSDTGISNPRLSYSSESDANFSFESMPYGRKSTEMSTPREFTSLSFESDSLSSSTSQAADEMEAEMRRLKLELKQTMEMYNTACKEALTAQQKAVELQRWKLEETRRLEEARMAEEAARAIAEKERAKSKFKCHLDHTPVAVKVLRPDAQQGRSQFKREVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRQGNVARLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNFVAKISDVGLARLVPPSVADTVTQYHMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLTHHVGRAIEKGTLAEMLDPSVPDWPLEDALQFAKLAVQCAELRRKDRPDLGKVILPELNRLRNLAEDSDLISVLGNPRNMPRERQVSVVLVSSYVVS*	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu9g01800	689	PANTHER	OS02G0152300 PROTEIN	402	669	-	-
	Lapu9g01800	689	Coils	Coil	381	401	-	-
	Lapu9g01800	689	SUPERFAMILY	Protein kinase-like (PK-like)	402	645	IPR011009	-
	Lapu9g01800	689	FunFam	U-box domain-containing protein 51	460	660	-	-
	Lapu9g01800	689	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	19	146	-	-
	Lapu9g01800	689	Pfam	Universal stress protein family	18	145	IPR006016	-
	Lapu9g01800	689	SMART	serkin_6	381	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g01800	689	Coils	Coil	323	350	-	-
	Lapu9g01800	689	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	505	517	IPR008271	GO:0004672\|GO:0006468
	Lapu9g01800	689	Pfam	Protein kinase domain	406	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g01800	689	MobiDBLite	consensus disorder prediction	208	289	-	-
	Lapu9g01800	689	Gene3D	HUPs	18	168	IPR014729	-
	Lapu9g01800	689	MobiDBLite	consensus disorder prediction	252	289	-	-
	Lapu9g01800	689	CDD	STK_N	17	171	-	-
	Lapu9g01800	689	Gene3D	Phosphorylase Kinase; domain 1	399	460	-	-
	Lapu9g01800	689	Gene3D	Transferase(Phosphotransferase) domain 1	461	664	-	-
	Lapu9g01800	689	ProSiteProfiles	Protein kinase domain profile.	379	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g01800	689	MobiDBLite	consensus disorder prediction	208	230	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu9g01800	Lapu-Chr9	32817055	32824566	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu9g01800	18	660	Receptor kinase-like Gene Family	AT5G35380	52.867	0.0	667

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Lapu9g01800		Pkinase	2.4e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu9g01800	-		-	gmx:100779981	740.339