Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01718 ATGATGTGGCTCAATAGGCATAGACACAATATTAGTATTCTCCCAACAAACACAAAAAAGTTGTTGGCCGTGATCATGTCGAGCATTTCCTTGAAGGAGAACGGTGGTGAGGCTTCTGTGGCGAAGGATTATAGCAATGGTGGGGGTGTGAGGGACTTGTATGGTGAGGATAGTGCCACAGAGGACCAGCTTATCACTCCATGGACTTTCTCTGTGGCCAGTGGATGCAGTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCCTTTACCGAGGGAGAGAGAGATGCTCATTACTTGCGTGGCCTTTTGCCTCCAGCTGTCTTCAAGCAGGAACTTCAGAGAACAGAACCAAAACACTTGAAATTGCATCTAACTTTATCCTTTACACAAATGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCTTGATGGATCTTCAGGAGAGGAATGAAAGGTTGTTCTACAAGCTTCTGATCGATAATGTTGAGGAACTGCTTCCTGTTGTTTACACTCCAACGGTTGGAGAAGCATGCCAGAAATACGGAAGCATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAAGAAAAGGGCAAGATCCTTGAAGTACTGAAAAACTGGCCAGAAAAGAGCATTCAAGTTATTGTTGTGACCGATGGTGAGCGTATATTAGGACTTGGAGATCTTGGCTGCCAGGGAATGGGAATTCCTGTTGGGAAACTTTCTCTCTACACTGCTTTAGGAGGTGTTCGCCCTTCGTCTTGCTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGCTGCTGAATGACGAGTTTTACATCGGGCTTAGACAAAGGCGTGCAACGGGGAAGGAATATGCGGAGCTTCTAGATGAGTTTATGCGCGCAGTTAAGCAGAACTATGGAGAGAAAGTTCTCATACAGTTTGAGGATTTCGCCAATCATAATGCATTTGATCTGCTGGCAAAATACAGCTCATCTCATCTTGTTTTTAACGATGATATCCAGGGCACAGCATCTGTTGTATTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAGCCTTAGCTGACCACACCTTCTTATTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCGGAGCTCATTGCCCTTGAGATTTCAAAGCAGACAAAAGCTCCAGTGGAAGAGACCCGCAAGAAAATTTGGCTTGTGGATTCAAAGGGACTCATTGTTAGCTCTCGTCTGGAATCACTTCAGCAGTTCAAAAAGCCTTGGGCCCATGAGCATGAACCTGTGAAGGGGCTTCTAGATGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAAGTGGTTGAAACCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCTCTCTCTAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTACACATGGAGCAAGGGTAGAGCAATCTTTGCTAGCGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAACTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGTTTTGGCTTGGGTTTGATCATCTCTGGTGCAATCCGTGTGCGTGATGAGATGCTCTTGGCAGCTTCTGAAGCTTTGGCTGCACAAGTATCACAGGAGAACTATGATAAGGGACTGATTTACCCTCCGTTCTCAAACATCAGGAAGATATCAGCGCACATTGCTGCTAAAGTGGCAGCTAAGGCATATGATCTAGGTCTGGCTTCTCATCTGCCTCGACCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAGGCTACCGAAGCTACCGTTGA 1899 0.4571 MMWLNRHRHNISILPTNTKKLLAVIMSSISLKENGGEASVAKDYSNGGGVRDLYGEDSATEDQLITPWTFSVASGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPAVFKQELQRTEPKHLKLHLTLSFTQMEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQRRATGKEYAELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLAKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGALADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKGLIVSSRLESLQQFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVETMASLNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFSNIRKISAHIAAKVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01718 632 PIRSF ME 39 632 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 Gene3D - 346 632 - -
Lapu9g01718 632 Pfam Malic enzyme, NAD binding domain 348 600 IPR012302 GO:0051287
Lapu9g01718 632 ProSitePatterns Malic enzymes signature. 344 360 IPR015884 GO:0004471
Lapu9g01718 632 PANTHER MALIC ENZYME-RELATED 48 632 - -
Lapu9g01718 632 Gene3D - 73 345 IPR037062 GO:0004471
Lapu9g01718 632 SMART Malic_M_2 348 601 IPR012302 GO:0051287
Lapu9g01718 632 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 56 347 IPR046346 -
Lapu9g01718 632 FunFam Malic enzyme 346 632 - -
Lapu9g01718 632 FunFam Malic enzyme 73 345 - -
Lapu9g01718 632 CDD NAD_bind_1_malic_enz 348 626 - -
Lapu9g01718 632 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 348 631 IPR036291 -
Lapu9g01718 632 SMART malic_2 157 338 IPR012301 GO:0004471
Lapu9g01718 632 PRINTS Malic enzyme signature 344 360 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 PRINTS Malic enzyme signature 375 391 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 PRINTS Malic enzyme signature 163 187 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 PRINTS Malic enzyme signature 223 252 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 PRINTS Malic enzyme signature 319 337 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 PRINTS Malic enzyme signature 259 281 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 PRINTS Malic enzyme signature 478 494 IPR001891 GO:0004470|GO:0004471
Lapu9g01718 632 Pfam Malic enzyme, N-terminal domain 157 337 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01718 Lapu-Chr9 32013918 32018957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01718 K00029 - gmx:100801564 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01718 9 32013918 32018957 Lapu9g01718 9 32013918 32018957 ECH
Lapu9g01718 9 32013918 32018957 Lapu10g00531 10 7619508 7635540 ECH
Lapu9g01718 9 32013918 32018957 Lapu5g00191 5 1534158 1541337 ECH
Lapu10g00531 10 7619508 7635540 Lapu9g01718 9 32013918 32018957 ECH
Lapu5g00191 5 1534158 1541337 Lapu9g01718 9 32013918 32018957 ECH