Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu9g01685 | ATGGGCACTGGTTGGAGGAGAGCCTTCTGCACCCGCGACCCAGCTTCTACCATATCGGATAAACAGCCGGGAACCCCGAGCCCAAGCCCCAGCCCGAGAAGCTGCGCCCGCTTGGGTTTTCTCTCCGGAGGAAGCAACCCTTCCACCCCACGCTTGCGTTGCACAACAACACCACAATCTTCTTCTCAAACAGTTACTGTAAACGAAAGCCCCAGAGTTCAAAGCAAGAACACCTCCAGAGTAACCAAGTCTCCCAAAACGCTCTCACTCTCAAATCCAACTTCACCGCGTTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGTTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCTATTTACACTGCGGAATGCGGTCACGCTTTTCATTTCCCGTGTATCGCAGCGCATGTTCGCAAACACGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAAGACGTCCCACTTCTCGCGGCGCACAAGAACCTCGCTGCACAATCCGCCACGCAGAACGACGTCGCCAACAGGACCACCGAAAACCCCAATGCCACTGTCAAAAAGCCAAATGAAAGCACGTCCCCCGTTTTCAAAACCTACAACCAGGTGGAGCCACCACTCAAGCATTCGGATTCGCTTCGCTCTTACGACGACGACGAGCCACTCCTCTCTCCAACATCCGGCGGAAGGATCATTCCTATTCCCGAAGCCGACGAGAATGCGGAAGACGATGACGACGAAGACGCCGGCGAGTTCCAAGGCTTTTTCGTCAATACGAAGAATTCCTCCTCCTCAAAATCGTACTCCGATTCGTTCCAAACAACTGACGGAGACTCCAGAACGGTTCAGGTGAAACTCATGCCAGAGTGCGCCGTCATCTCAGCCTCCCGAACGCACGAGACCTACGCTTTGGTGCTGAAAGTTAAGGCTCCACCTCCGCCAGCTCCACCACGGAGCAGCGCGGCCCCATCCCAGCGTGCACCCATAGATCTCGTTACTGTGCTGGACGTTGGTGGAAACATGACCGGCGCGAAGCTGCATATGCTAAAGCGCGCTATGCGTTTGGTTATCTCATCGCTTGGTCCCGCTGACAGGCTCTCAATCGTTGCTTTCTCCGCCACCTCGAAACGGCTCTTGCCTTTGCGCAGAATGACGGCCCAAGGTCAGCGCGTGGCCCGGCGCATCATTGACCGCCTCGTGGCTGCTCAAGGGTCGAGTGTAGGCGACGCGTTGAGGAAGGCAACGAGAGTGTTAGAGGATCGCAGAGAGAGAAACCCGGTGGCGAGCGTGATGCTGTTATCGGACGGTCAAGAAGAGAGGGTTCAGAATCAGCGGGGTAACAGTAGTGGTGGTCAGAGGAAGTGGTCGAGCCACGTGTCGTCAACGCGGTTCGCGCATATCGAGATTCCGGTTCACGCATTCGGGTTCGGGGCGAAAAGCGGTTACAGCCAAGAACCGGGAGAGGAGGCGTTCGCGAAGTGCGTGGGTGGGCTTCTGAGTGTGGTGGTGCAAGACTTGAGGATTCAGGTGGGGTTTGAGTCAGAGGCGGTCGAGATGAGCGCGATTTACTCGTGCAGTGGAAGGCCCAGTCTGCTGAGCTCAGGGGCGGTTCGGCTGGGCGACTTGTACGCCGAGGAAGAGAGGGAGCTGCTGGTGGAGTTGAGAGTTCCCGCGTCGTCAGGACCTGGGACCCACCACGTGATGGCGGTACGGTGCCTCTACAAGGACCCTGCTAGCCAGGAGATCGTATACGGTAGGGAACAGGGTCTCCTGGTGCCGCCGCCTCAGAGCCTGCGTTGTTCCGCTACTAGAATCCAGAGGCTCAGGAATCTCTTCATAACCACCCGAGCCATTGCAGAGTCCAGGAGGCTTCTTGAGCACAACGCTGACTTCACCAGCGCGCATCATTTGCTTGCCTCCGCGCGTGCACTTCTCATGCACTCTAACGCCGCCTCGCCTGAAGACTACGTGCGCGCCTTGGAGGCTGAGCTGGCAGAGCTCCATTGGCGGAGGCAGCACGAGCAGGTTCAGCAGCAGCAAATTGTGCAACAGCGGAGAAGAGGGGGTGAGAGAGAGGTGAGTTTGGTGGACGAGAATGGCGAGCCGCTTACCCCCACGTCGGCTTGGAGAGCCGCGGAGAAGCTGGCTAAGATGGCAATGATGAAGAAGTCTTTGAACAGAGTGAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA | 2253 | 0.5704 | MGTGWRRAFCTRDPASTISDKQPGTPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTTPQSSSQTVTVNESPRVQSKNTSRVTKSPKTLSLSNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAQSATQNDVANRTTENPNATVKKPNESTSPVFKTYNQVEPPLKHSDSLRSYDDDEPLLSPTSGGRIIPIPEADENAEDDDDEDAGEFQGFFVNTKNSSSSKSYSDSFQTTDGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPAPPRSSAAPSQRAPIDLVTVLDVGGNMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIIDRLVAAQGSSVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNSSGGQRKWSSHVSSTRFAHIEIPVHAFGFGAKSGYSQEPGEEAFAKCVGGLLSVVVQDLRIQVGFESEAVEMSAIYSCSGRPSLLSSGAVRLGDLYAEEERELLVELRVPASSGPGTHHVMAVRCLYKDPASQEIVYGREQGLLVPPPQSLRCSATRIQRLRNLFITTRAIAESRRLLEHNADFTSAHHLLASARALLMHSNAASPEDYVRALEAELAELHWRRQHEQVQQQQIVQQRRRGGEREVSLVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF* | 751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu9g01685 | 750 | MobiDBLite | consensus disorder prediction | 179 | 260 | - | - | |
| Lapu9g01685 | 750 | Gene3D | von Willebrand factor, type A domain | 341 | 513 | IPR036465 | - | |
| Lapu9g01685 | 750 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 160 | IPR001841 | - | |
| Lapu9g01685 | 750 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 221 | IPR013083 | - | |
| Lapu9g01685 | 750 | MobiDBLite | consensus disorder prediction | 447 | 466 | - | - | |
| Lapu9g01685 | 750 | MobiDBLite | consensus disorder prediction | 444 | 466 | - | - | |
| Lapu9g01685 | 750 | Pfam | von Willebrand factor type A domain | 342 | 448 | IPR002035 | - | |
| Lapu9g01685 | 750 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
| Lapu9g01685 | 750 | SMART | ring_2 | 115 | 159 | IPR001841 | - | |
| Lapu9g01685 | 750 | ProSiteProfiles | VWFA domain profile. | 341 | 488 | IPR002035 | - | |
| Lapu9g01685 | 750 | SMART | VWA_4 | 339 | 529 | IPR002035 | - | |
| Lapu9g01685 | 750 | CDD | RING-H2_WAVH2 | 112 | 165 | - | - | |
| Lapu9g01685 | 750 | MobiDBLite | consensus disorder prediction | 179 | 219 | - | - | |
| Lapu9g01685 | 750 | Pfam | RING-like zinc finger | 115 | 144 | IPR001841 | - | |
| Lapu9g01685 | 750 | MobiDBLite | consensus disorder prediction | 41 | 98 | - | - | |
| Lapu9g01685 | 750 | MobiDBLite | consensus disorder prediction | 268 | 287 | - | - | |
| Lapu9g01685 | 750 | CDD | vWA_C3HC4_type | 340 | 514 | - | - | |
| Lapu9g01685 | 750 | SUPERFAMILY | vWA-like | 339 | 518 | IPR036465 | - | |
| Lapu9g01685 | 750 | PANTHER | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR | 113 | 745 | - | - | |
| Lapu9g01685 | 750 | SUPERFAMILY | RING/U-box | 108 | 165 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu9g01685 | Lapu-Chr9 | 31596208 | 31599544 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu9g01685 | 60 | 189 | C3H Transcription Factor Family | AT5G17600 | 26.471 | 1.38e-06 | 49.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu9g01685 | - | - | gmx:100782780 | 1177.16 |