Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01672 ATGGATAATGGCATAGTCCAGGTTACGTTATCAAATCCAGGTGGGATTGTCACTGGGATACGATATAATGGTGTGGACAATTTGCTCGAGGTTCTCAACAAGGAGTCTAATAGAGGGTATTGGGACCTCATTTGGAGTGCGCCAGGAAGCAAAGGGATCTTTGATGTATTTATAATGCTCCGCGGTTCATCTGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTCAGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACAAGATTTTCATCCACTTTAACAATGAAGTATGTAGGTTTCAATACATGGCTATGGCAGACAATAGACGAAGGATTCTTCCTTATCCGGAAGATCGGTTACCCGGAAGATGCCAAACCTTGGGCTACGCAGAAGCTGTCCTACTAACAAATCCCAAAGACCCACAATTGCGTGGAGAGGTGGATGACAAGTATCAGTATTCATGTGCAAACATGGATAATCGAGTACATGGGTGGATATCTTTCAGTCCACCAGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAAAATTTGACATCACACGTGGGCCCCACCACGCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATTTGGTGCCTAAAATTAGAGCTGGTGAATCATGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTCAATTCTTCAGCAGTTGGTGACGATCCACTTTGGTTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCGTATTATTTCCCAGCTTCAGAGGATTTTTTAAAATCAGACCAACGGGGCAACGTCAGTGGCAGATTACTTGTCTTAGACAAGTACATCTGCACTGACTTAATATCAGCAAAAGGTGCTTATGTTGGCCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGAGAATGGATTTTTTACTATTAGAAATGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTGCCTGGCTTTGTTGGGGACTACAAATTTGTAGATTTTATGAAGATAGCGCCAGGTTCTTACACTGAATTGGGTGAACTTGTATATGAGCCTCCAAGAGATGGTCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCAGAATTTTACGCTCCTGATCCCAATCCCCAATATGTTAATAGGCTTTTTATCAACCACCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATACGGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTATGCGCAGGCTCCGAGGAAAAAAGAAGATAACACTCTTCAGGGGACAATTTGGCAAATTAAGTTCGAAGTCAGTAGCGTGGTTAAGGGAAGTACATACAAACTGAGAGTTGCTATTGCATCTGCAACATTAGCTGAATTGCAGATTAGAGTAAATGATCCCAATGCTGGGCGACCCCTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCTAGACATGGAATTCACGGAATCTATTGGCTTTACAATGTGAGTATACCAGGATTAAAAGCAATGAAAATTCATGTGCAGGTGGTGATGGAAAATGGCATACTAAAAGTCACCTTGTCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATAACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCCACAAGTACAACAACCAGTGGTACATTTGATGTCATCAATGGAACAACATTTCGAGTTATGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCAGCAGGACGTGGGACGTCTCTCTCGAGGGCAAGTTGGTTCCTTTAAATATTGACAAAAGGTTCATAATGCTTGGTGGTTGTTCGGGCTTCTACTCCTATGCAATTTATGAGCACTTGGAGGAGTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTACATGGCGATGGCTGATAATAGACAAAGAAACATGCCTCTTCCAGATGACAGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAAGCAGTTCTACTTGTCAATCCCATGGAACCAGAACTAAAGGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGACAACAAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGATTCTGGCTAATTACGCCCACCGATGAGTTTCGATCTGGTGGGCCCCTCAAACAAAACTTAACTTCCCATGTGGGCCCGACCACGCTAGCAATGTTTCTGAGTGCTCACTATAGTGGAGAGGATTTGGTGCCTAAGTTTAATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCTGTTTTTATTTACTTGAATTCTTCCTATGATGGAGGTGACCCCCTTATGCTGTGGGAAGATGCCAAACTACAGATGTTGGAGGAAGTTCAAAGCTGGCCCTACAGTTTCCCTGAATCAGAGGATTTCGCGAAGTGGGACGAACGTGGTCATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATCGACGATGACTACATCTCAGCAAAAGGTGCTTATGTTGGCTTGGCTCCACCAGGTGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCGCCATCTCCAATGTACGTGCAGGAGATTACAATGTTTACGCGTGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATGAACATAACAGAAGGTTGTGACATCGACGTTGGTGATCTTGTATATGAACCTCCCAGAGATGGTCCAACGCTGTGGGAAATTGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCTAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTCTACCCTGACAAAGACTTGATCTACACAATTGGCGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATTTCAAGGAACCACATGGCAGATCAAGTTTCAGCTTGATAAGGTGAACAAAACCAGCAGCTATAAACTGCGGGTGGCTTTGGCATCAGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGGTCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTTTATTGGCTTTACAATGTAGACATACCAGGAACTCAACTTGTTGAAGGAGATAATACCATCTTTTTGACACAGAGCAGAGGCAATAGTCCATTTCAGGCAATTATGTATGATTATATTCGTTTGGAAGCTCCACCATCATCTACCTTCAATAACACAAGATATCTGAAAATTTTCAAGGGACTAATTTATTGTGTCTCATCCCCAGGAGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTTAACTTATCAAATCCTGAAGGAATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGAAGACTACGACAGAGGAATGGAAGCCACAAATTTAACGGTGATAGTGAACACCGAGGAACAAGTAGAGCTATCTTTCACCAGAACATGGAGTGCCTCTTTTCGGGGGAAGCTTCCGCCACTCAATATTGACAAAAGGTTTATATTGCTTCGTGGTTCCTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATCTCGACAATACTAGGATCGCATTCAAGACTAGGAAAGACAAGTGGGTTCCATTACATGGCTATAGCGGATGA 4038 0.4277 MDNGIVQVTLSNPGGIVTGIRYNGVDNLLEVLNKESNRGYWDLIWSAPGSKGIFDVFIMLRGSSGFYSYGIYEHLNGWPDFDLSETRITFKLRKDKIFIHFNNEVCRFQYMAMADNRRRILPYPEDRLPGRCQTLGYAEAVLLTNPKDPQLRGEVDDKYQYSCANMDNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKIRAGESWKKVFGPVYIYLNSSAVGDDPLWLWEDAKIQMMNEVQSWPYYFPASEDFLKSDQRGNVSGRLLVLDKYICTDLISAKGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFVDFMKIAPGSYTELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYVNRLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYRKDWFYAQAPRKKEDNTLQGTIWQIKFEVSSVVKGSTYKLRVAIASATLAELQIRVNDPNAGRPLFTSGLIGRDNSIARHGIHGIYWLYNVSIPGLKAMKIHVQVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNNESNRGYWDLVWSSPTSTTTSGTFDVINGTTFRVMVENEDQVELSFSRTWDVSLEGKLVPLNIDKRFIMLGGCSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPMEPELKGEVDDKYQYSCDNKDNKVHGWICMDPAVGFWLITPTDEFRSGGPLKQNLTSHVGPTTLAMFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLMLWEDAKLQMLEEVQSWPYSFPESEDFAKWDERGHVSGRLLVRERYIDDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFAISNVRAGDYNVYAWVPGFIGDYKYDVVMNITEGCDIDVGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTFQGTTWQIKFQLDKVNKTSSYKLRVALASATLSELQVRVNNPKGPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGTQLVEGDNTIFLTQSRGNSPFQAIMYDYIRLEAPPSSTFNNTRYLKIFKGLIYCVSSPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNEDYDRGMEATNLTVIVNTEEQVELSFTRTWSASFRGKLPPLNIDKRFILLRGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKTRKDKWVPLHGYSG* 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01672 1345 FunFam Rhamnogalacturonate lyase B 878 977 - -
Lapu9g01672 1345 FunFam Rhamnogalacturonate lyase B 283 381 - -
Lapu9g01672 1345 Pfam Polysaccharide lyase family 4, domain II 309 381 IPR029413 -
Lapu9g01672 1345 Pfam Polysaccharide lyase family 4, domain II 904 976 IPR029413 -
Lapu9g01672 1345 CDD RGL4_C 397 589 - -
Lapu9g01672 1345 Gene3D - 283 370 - -
Lapu9g01672 1345 Gene3D - 880 972 - -
Lapu9g01672 1345 CDD RGL4_N 1 247 - -
Lapu9g01672 1345 SUPERFAMILY Galactose mutarotase-like 566 842 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lapu9g01672 1345 CDD RGL4_N 561 851 - -
Lapu9g01672 1345 CDD RGL4_M 881 980 IPR029413 -
Lapu9g01672 1345 SUPERFAMILY Galactose-binding domain-like 392 552 IPR008979 -
Lapu9g01672 1345 CDD RGL4_M 286 385 IPR029413 -
Lapu9g01672 1345 Pfam Polysaccharide lyase family 4, domain III 990 1178 IPR029411 -
Lapu9g01672 1345 Pfam Polysaccharide lyase family 4, domain III 395 552 IPR029411 -
Lapu9g01672 1345 Gene3D - 140 259 IPR014718 GO:0030246
Lapu9g01672 1345 SUPERFAMILY Starch-binding domain-like 919 971 IPR013784 GO:0030246
Lapu9g01672 1345 SUPERFAMILY Starch-binding domain-like 329 382 IPR013784 GO:0030246
Lapu9g01672 1345 SUPERFAMILY Galactose mutarotase-like 7 250 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lapu9g01672 1345 Gene3D - 988 1179 - -
Lapu9g01672 1345 Gene3D - 393 571 - -
Lapu9g01672 1345 CDD RGL4_C 992 1179 - -
Lapu9g01672 1345 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 553 - -
Lapu9g01672 1345 SUPERFAMILY Galactose-binding domain-like 987 1179 IPR008979 -
Lapu9g01672 1345 Pfam Rhamnogalacturonate lyase family 1 56 IPR010325 -
Lapu9g01672 1345 Pfam Rhamnogalacturonate lyase family 559 750 IPR010325 -
Lapu9g01672 1345 Pfam Rhamnogalacturonate lyase family 1209 1337 IPR010325 -
Lapu9g01672 1345 Pfam Rhamnogalacturonate lyase family 57 155 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01672 Lapu-Chr9 31454910 31481405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01672 1 557 Polysaccharide Lyase AT1G09890 62.795 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01672 K18195 - gmx:100814721 1241.87