LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu9g01671	ATGGCTTCTGCACCTTCCTTCACTCTCTCCCTCTTCTTCCTCCTCACCCTCATGCTATTCCTTCCACACGCACCACACGCCAGAGAAACTCCACCTCCAACTCCCCACGGAATCAATGCTCCACCCCCGCCCGACAACGACACTGACCCCACGCCGCCGTTCAGACCAGGCATAGCGGTCATCGTCTGCGTTTTGACCACCATAGTCTCCCTCACGTCGCTCCTCCTCCTTTACATCAAACACTGCAACGGCGCCAGCATCCACAGCGGCGGCGGCAGCGGCGGGAGCTCAATTCCGTGGACGGTGGCGCCTTTCTCCGGGAGAAAGAACTCCGGCATTGACCGGTCCGTGGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGAGGACAAAAGGAGGGGCTGGACTGCGCGGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTCTGCCGGTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACGCAAAGCCTTTCCGCCAAACTCAGCAACCGCAACAGCAACAACGGAACAACAACAGCAGCAGCGAGGAACGCGTGCGTTTGAATTTGGACGTGGAGAAGCAGGAGATTGTGGAGTGCGGACGGAGGCATTCGTCGGTGGGGGAGAGGGAAACGGAGGGGCAGAGTCGGAGGTGGACGACGTCGTTTAGAAGGTCATTGGATAGCGCGACGTGGAGGAAAAAGCAGGAGAGCGTTGGTGTTGGTGTTGTTGGTATTGGTTGGTTCGTGCGTGGGAGAAAAGACGGGATGCTGTTGACGCAAGAAACGGAGAGAGAGGGAGATAGGAGAAGCGTGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGCCCAGGAAAGATGAATGGGGTCCAGCAGCGATGGAGCGACGTGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGCGAGGCGCAATGGAACACGCGCCGTGGAGGAAGACGAAGGGGGACGCGCCGTACCCATGTTGATGATGCGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATAGCAATAATAATAACGAGGAGGACAGAGACAGGGACAGAGAGTGGGAGCAACAACGACAGGGAGAGAGAGAAGAGGGACTGGTTCGAAGGTGGTTGGGTTGGATTTCAAAGTCACGCACACAACAAACACATTCACTAACCCAACCAGCTGTACGGTAG	1350	0.5726	MASAPSFTLSLFFLLTLMLFLPHAPHARETPPPTPHGINAPPPPDNDTDPTPPFRPGIAVIVCVLTTIVSLTSLLLLYIKHCNGASIHSGGGSGGSSIPWTVAPFSGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKPFRQTQQPQQQQRNNNSSSEERVRLNLDVEKQEIVECGRRHSSVGERETEGQSRRWTTSFRRSLDSATWRKKQESVGVGVVGIGWFVRGRKDGMLLTQETEREGDRRSVERRLEHRIIVSPGPGKMNGVQQRWSDVQASDLLYLTSEMIMSEAQWNTRRGGRRRGTRRTHVDDAVEDSWSGRGIINSRSVSEITGLSRFSSNSNNNNEEDRDRDREWEQQRQGEREEGLVRRWLGWISKSRTQQTHSLTQPAVR*	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu9g01671	449	MobiDBLite	consensus disorder prediction	28	51	-	-
	Lapu9g01671	449	MobiDBLite	consensus disorder prediction	391	417	-	-
	Lapu9g01671	449	MobiDBLite	consensus disorder prediction	198	217	-	-
	Lapu9g01671	449	SMART	ring_2	138	179	IPR001841	-
	Lapu9g01671	449	MobiDBLite	consensus disorder prediction	400	417	-	-
	Lapu9g01671	449	CDD	RING-H2_EL5-like	137	180	-	-
	Lapu9g01671	449	FunFam	RING-H2 finger protein ATL43	113	187	-	-
	Lapu9g01671	449	Pfam	Ring finger domain	137	180	IPR001841	-
	Lapu9g01671	449	ProSiteProfiles	Zinc finger RING-type profile.	138	180	IPR001841	-
	Lapu9g01671	449	MobiDBLite	consensus disorder prediction	198	218	-	-
	Lapu9g01671	449	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	112	187	IPR013083	-
	Lapu9g01671	449	SUPERFAMILY	RING/U-box	132	185	-	-
	Lapu9g01671	449	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL42	28	430	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu9g01671	Lapu-Chr9	31451678	31453027	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu9g01671	51	431	C3H Transcription Factor Family	AT5G05810	43.350	9.68e-82	256