Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01653 ATGGATTTTGACGACCACGAAGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGAGGAAGAGGATATGGGATTCTCAGTGGCGCCGTCGGGTTACGACTCCTTCGGAAACGCCGCGGCAAGGTCTAAAATCACCGCCTCTGAGGGACTTCCGGCCGCCGTCAATTCAGGTCGAAAAGGCGGCTCCACGGGGACGGTCAGATACAGAGAATGTCAGAAGAATCATGCCGTCAGCATCGGCGGACACGCCGTCGATGGCTGCTGCGAGTTCTTGGCCGCCGGAGAGGAAGGCACGCTGGAGGCCGTAATCTGCGCCGCCTGTAATTGTCACCGCAATTTTCACCGCAAGGAGATCGACGGCCAAATCAGCCCTTACCAACTGCGCTCGCAGCCGCAGCCCCAACCGCTGCATCCTCAGTATCACCACCAATTCTCCCCTTACTACCACCGCGCGCCACCACCTTCCGCCTCCGGATACCTCAACCACCACCACCACCTGTTAACCCCTCCGGTGTCGCAGCATCGGCCTTTGGCGCTTCCACCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCGAGCGGCGGCGGAGGTGGCGGTTTTGGTGGTGGTAGCGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGACAAGATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCATGACGAAGCTGCTGTGGAACAATTCTGCGCTGAAACTTGTGTCAGGAGACATGTACTCAAGGTCTGGATGCACAACAACAAACACACTCTCGCTAATTCTGAGCAACGTTCGGCTGGGAATGGATCGAATCACTTGAACAGCTCCACCATAATTGGGAATTCTGAACTCTCCTAA 930 0.5645 MDFDDHEEQEEEEEEEEEEEEEEEEEEDMGFSVAPSGYDSFGNAAARSKITASEGLPAAVNSGRKGGSTGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGQISPYQLRSQPQPQPLHPQYHHQFSPYYHRAPPPSASGYLNHHHHLLTPPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGFGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEAAVEQFCAETCVRRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTIIGNSELS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01653 309 Gene3D - 212 286 - -
Lapu9g01653 309 MobiDBLite consensus disorder prediction 284 309 - -
Lapu9g01653 309 MobiDBLite consensus disorder prediction 166 224 - -
Lapu9g01653 309 NCBIfam homeobox domain, ZF-HD class 223 279 IPR006455 -
Lapu9g01653 309 SUPERFAMILY Homeodomain-like 210 281 IPR009057 -
Lapu9g01653 309 Coils Coil 1 29 - -
Lapu9g01653 309 Pfam ZF-HD protein dimerisation region 72 124 IPR006456 -
Lapu9g01653 309 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 282 - -
Lapu9g01653 309 FunFam Zinc-finger homeodomain protein 2 216 284 - -
Lapu9g01653 309 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 73 124 IPR006456 -
Lapu9g01653 309 MobiDBLite consensus disorder prediction 1 45 - -
Lapu9g01653 309 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 74 123 IPR006456 -
Lapu9g01653 309 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01653 Lapu-Chr9 31254412 31257222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01653 23 282 ZF-HD Transcription Factor Family AT4G24660 49.248 1.23e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu9g01653 ZF-HD_dimer 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01653 - - pvu:PHAVU_009G037900g 518.079