Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01647 ATGACAAGGGCGAAGATAAAGATAAAGAAAATCGACAACATAACTGCAAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGTTGTTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGTGATGCTGATGTTGGTCTCATAGTTTTCTCATCAACGGGGAAGCTATTTGATTACAGCAGTTCCAGTATGAATGAGATAATTACAAAGTATAATACGCACTCACCTGGCATCAACAAATCGGAAAAGCCATCACTAGAACTGCAGCTAGAGGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGAAGACAGAACCCAAGAACTAAGTTGGATGAAAGGCGATGATCTTCAAGGACTAGGCCTGAACGAGTTGCAGCAACTGGAGAAAACACTTGAAAATGGACTCGACCGTGTGATTGAGATAAAGGAAAAGCGGATGATGGGGCAGATTTGTGACCTTCAGAAAAAGGGAATACTGTTGGAAGAAGAGAACAAGCACTTAAAGAGAAAGCTAGCGGGGACGGAGATGGTGGCTATGGTGCGTAAAGCAAAAATGAGTTTTATGATGGAGTCAAATATGGGAATGCAAGAAGGTGTTTCATTGGAGTCTACAAACAACGTTAGCAGTTGCATCAGTGACCCTCCTGTTGAAGACGGTTCCTCGGACACATCTCTCAAGTTAGGGCTACCCTTCTCTAACTGA 699 0.4306 MTRAKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSSTGKLFDYSSSSMNEIITKYNTHSPGINKSEKPSLELQLEASNSAKLSKEIEDRTQELSWMKGDDLQGLGLNELQQLEKTLENGLDRVIEIKEKRMMGQICDLQKKGILLEEENKHLKRKLAGTEMVAMVRKAKMSFMMESNMGMQEGVSLESTNNVSSCISDPPVEDGSSDTSLKLGLPFSN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01647 232 FunFam Transcription factor, MADS-box 13 83 - -
Lapu9g01647 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu9g01647 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu9g01647 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu9g01647 232 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Lapu9g01647 232 CDD MADS_MEF2_like 12 73 IPR033896 GO:0000977|GO:0045944
Lapu9g01647 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Lapu9g01647 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu9g01647 232 MobiDBLite consensus disorder prediction 198 232 - -
Lapu9g01647 232 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Lapu9g01647 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu9g01647 232 Coils Coil 123 143 - -
Lapu9g01647 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu9g01647 232 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu9g01647 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu9g01647 232 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01647 Lapu-Chr9 31194054 31200997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01647 1 230 MADS-box Gene Family AT2G22540 53.112 5.02e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu9g01647 K-box 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01647 - - gmx:100776749 357.836