Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01629 ATGATCTGCACTGCAGGCTGTGGAAATAATGATCAACAAGCTAAAGAACCTGATTTGCTGAGAACTCGCAAGGGCTCCATATATGCTTCAGTAGATCAAATCTGTGAAGGAACAGAACCATCTCTTTTTCCCTTTGGATTAGAAGGGAATGACGAGGAATGTGCAGTTCTTAGTTCGGTTTTGCCTACCATCCATGAAGATGATAATAAAGTTCTTCATCCAGCCATCGAAGCTTCACCACACGAATATCCAAGCCTTAGTGAAGATGTAGTAGAAGTACAAGAAATTTCCAACAATGAGATCATTGTAAATGGAAGTTCTGTGATGAAAAGTAGTTTCAAGCGATCTATACTTGGTTCTTCCAGCCAGTCTGAACTGAAACAGGTAGACAACAGAATTGAAAACAAGGGTTGTTTACCTGCTGGGAATATTCCAAGATATGTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATAGCATGGGAGGATTTACGAATTAAAGAACGTGTTGGTGCTGGTTCATTCGGGACAGTGTACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAGTTCCTGAGAGAGGTTGCAATAATGAAACGGGTTCGCCATCCAAATGTGGTGCTCTTCATGGGGTCTGTCACAAAACGCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTGATACACAGACCTGCATCTGGTGAAGTTTTGGATAAGAGGAGGAGACTACGGATGGCTTTGGATGTGGCTAAAGGAATCAATTATCTCCACTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGTTAGTAGATAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCGTCGAAATCAGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCCAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCTTGCAACAACCATGGAGTGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATCTCCCCAGCATTGGCCTCCCTCATGGAATCTTGTTGGGCGGAGTAA 1218 0.4368 MICTAGCGNNDQQAKEPDLLRTRKGSIYASVDQICEGTEPSLFPFGLEGNDEECAVLSSVLPTIHEDDNKVLHPAIEASPHEYPSLSEDVVEVQEISNNEIIVNGSSVMKSSFKRSILGSSSQSELKQVDNRIENKGCLPAGNIPRYVNLEPSLAMDWLEIAWEDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEVLDKRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTLQQPWSGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWAE* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01629 405 FunFam Serine/threonine-protein kinase CTR1 245 405 - -
Lapu9g01629 405 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672|GO:0006468
Lapu9g01629 405 PRINTS Tyrosine kinase catalytic domain signature 240 253 IPR001245 GO:0004672|GO:0006468
Lapu9g01629 405 PRINTS Tyrosine kinase catalytic domain signature 391 405 IPR001245 GO:0004672|GO:0006468
Lapu9g01629 405 PRINTS Tyrosine kinase catalytic domain signature 281 299 IPR001245 GO:0004672|GO:0006468
Lapu9g01629 405 PRINTS Tyrosine kinase catalytic domain signature 328 338 IPR001245 GO:0004672|GO:0006468
Lapu9g01629 405 CDD STKc_MAP3K-like 172 405 - -
Lapu9g01629 405 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 88 404 - -
Lapu9g01629 405 ProSiteProfiles Protein kinase domain profile. 166 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01629 405 FunFam Serine/threonine-protein kinase isoform 1 156 244 - -
Lapu9g01629 405 ProSitePatterns Protein kinases ATP-binding region signature. 172 193 IPR017441 GO:0005524
Lapu9g01629 405 Pfam Protein tyrosine and serine/threonine kinase 166 404 IPR001245 GO:0004672|GO:0006468
Lapu9g01629 405 Gene3D Phosphorylase Kinase; domain 1 159 243 - -
Lapu9g01629 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Lapu9g01629 405 Gene3D Transferase(Phosphotransferase) domain 1 245 405 - -
Lapu9g01629 405 SMART serkin_6 166 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01629 405 SUPERFAMILY Protein kinase-like (PK-like) 144 404 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01629 Lapu-Chr9 31052824 31056256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01629 8 405 MAP Kinase Kinase Kinase AT4G24480 64.662 1.76e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lapu9g01629 PK_Tyr_Ser-Thr 2.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01629 - - gmx:100808435 733.791