Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01626 ATGTACGACCCCATGAACCAGATCGTCCCTGCAGAAGACAACGACGCAGACGCCTCCGACCAACACATCCACTACAGCTCCCACACCATAGAAGACGGTGGCGCCGCCGTGGAAGACGTTTCCGCCGACGCCCTCTACGTTCCACCCCCGGAAATCTCTATCCAGGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTTGATGCCGTTACACCTGATAAGGTCCAAGCAGTATTGTTGCTGTTGGGAGGAAGTGAACTAACGTCGGGCTCGCAATGTGCGGGGGAACTATCTCCTCAAAATCATACGGGTGCAGCAGAATTCCCTACGAGATGCAGTCTACCACAGCGAGTAGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCACCGTAACAAGGGTCAATTTACTTCATCCAAGAAACAAGACGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGACAGGAGGCTGTTCAATTAGAAACCTCTTGTACACATTGCGGAACAAGTTCTAAATCCACTCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGACTTTTTTGGGCAAACAGGGGTGCTTTGAGGGATCTTTCCAAGAGAAACCAAGAACACTCTCTTGTTGCGCCCCTTGAGCAGGTTGATGTGGGTAGTAATAATAATGAATTGGATTGTCAGGGTGCTATCCCTTCACAACATAACAATCATGTTAACGATAACAAAGCTTTGGTATCTGATCGTTGA 837 0.4863 MYDPMNQIVPAEDNDADASDQHIHYSSHTIEDGGAAVEDVSADALYVPPPEISIQDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTSGSQCAGELSPQNHTGAAEFPTRCSLPQRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGTNSWGSDQESGQEAVQLETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLVAPLEQVDVGSNNNELDCQGAIPSQHNNHVNDNKALVSDR* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01626 278 SMART GATA_3 183 236 IPR000679 GO:0006355|GO:0043565
Lapu9g01626 278 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 234 - -
Lapu9g01626 278 CDD ZnF_GATA 188 234 IPR000679 GO:0006355|GO:0043565
Lapu9g01626 278 ProSiteProfiles CCT domain profile. 121 163 IPR010402 GO:0005515
Lapu9g01626 278 MobiDBLite consensus disorder prediction 155 180 - -
Lapu9g01626 278 Pfam tify domain 57 87 IPR010399 -
Lapu9g01626 278 Pfam GATA zinc finger 189 224 IPR000679 GO:0006355|GO:0043565
Lapu9g01626 278 SMART tify_2 53 88 IPR010399 -
Lapu9g01626 278 Gene3D - 180 238 IPR013088 GO:0006355|GO:0008270
Lapu9g01626 278 MobiDBLite consensus disorder prediction 258 278 - -
Lapu9g01626 278 ProSiteProfiles GATA-type zinc finger domain profile. 183 242 IPR000679 GO:0006355|GO:0043565
Lapu9g01626 278 PANTHER GATA TRANSCRIPTION FACTOR 28 20 255 IPR045280 GO:0006355
Lapu9g01626 278 ProSiteProfiles Tify domain profile. 53 88 IPR010399 -
Lapu9g01626 278 ProSitePatterns GATA-type zinc finger domain. 189 216 IPR000679 GO:0006355|GO:0043565
Lapu9g01626 278 Pfam CCT motif 121 163 IPR010402 GO:0005515
Lapu9g01626 278 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01626 Lapu-Chr9 30984285 30988794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01626 2 277 Tify Gene Family AT4G24470 52.218 1.08e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu9g01626 CCT 7.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01626 - - pvu:PHAVU_009G035400g 501.901