Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01625 ATGGCGTCTGTGAATCCGCAGCCTCTGCAGTTCCAGGACCCTGCGATACCCGTCGATAACGATGATGACAGTGACGGTGCTGATGATGATGCTATGGATGAGTTGGAGGATGCGCATGTCAGTTCAGTGAACGTTGTTGCTAATGCTGCGAGTGCGAGTCATGAAGCGGTGGCTGCTATGCCTTCGAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGCTGCTTTTGGGAGGACGGGATGTGCACGCAGGTGTGCCTGCAGTTGAACTGCCATTTGATCAAAGTAACAGGGGTATGGGTGATACTCCAAAGCGTTCGAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGCGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTGAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACGAAGTTCTGCTCAAGATGGCACTTCTCATTCTGAATCTGTACGTAGGTGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGACATTCCTATTGATGTCAAGCCTACTTCTGTTATTCAAGGGGAATTGCCCGGAATCCATGATGAGCAAGGTAGTTCTGAAGATCCGTCCAAGTCCAACACAGCTGATGGTTCTAGTGGTCATGCAGTTGTAAACCCTAGTGACGAGGAATTGCCTGAAACTGCAGACGATTTTAGGAATTCTCTGCCACTAGGACTTGGTCATTCTTCAACAAATGACACTGAACAGGAACCTCTGGTCGAACTTTCTAATCCTTCAGACACAGATATTGACATTCAAGGAAACTTTGATTAG 1053 0.4739 MASVNPQPLQFQDPAIPVDNDDDSDGADDDAMDELEDAHVSSVNVVANAASASHEAVAAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVHAGVPAVELPFDQSNRGMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSARSSAQDGTSHSESVRRCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDIPIDVKPTSVIQGELPGIHDEQGSSEDPSKSNTADGSSGHAVVNPSDEELPETADDFRNSLPLGLGHSSTNDTEQEPLVELSNPSDTDIDIQGNFD* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01625 350 MobiDBLite consensus disorder prediction 169 192 - -
Lapu9g01625 350 MobiDBLite consensus disorder prediction 1 32 - -
Lapu9g01625 350 MobiDBLite consensus disorder prediction 18 32 - -
Lapu9g01625 350 PANTHER GATA TRANSCRIPTION FACTOR 28 19 344 IPR045280 GO:0006355
Lapu9g01625 350 Gene3D - 193 246 IPR013088 GO:0006355|GO:0008270
Lapu9g01625 350 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Lapu9g01625 350 MobiDBLite consensus disorder prediction 269 350 - -
Lapu9g01625 350 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Lapu9g01625 350 MobiDBLite consensus disorder prediction 161 195 - -
Lapu9g01625 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 243 - -
Lapu9g01625 350 MobiDBLite consensus disorder prediction 317 350 - -
Lapu9g01625 350 Pfam CCT motif 128 169 IPR010402 GO:0005515
Lapu9g01625 350 SMART tify_2 60 95 IPR010399 -
Lapu9g01625 350 CDD ZnF_GATA 198 242 IPR000679 GO:0006355|GO:0043565
Lapu9g01625 350 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Lapu9g01625 350 ProSiteProfiles GATA-type zinc finger domain profile. 193 252 IPR000679 GO:0006355|GO:0043565
Lapu9g01625 350 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Lapu9g01625 350 Pfam tify domain 62 94 IPR010399 -
Lapu9g01625 350 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01625 Lapu-Chr9 30971678 30978417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01625 5 241 Tify Gene Family AT1G51600 49.213 1.73e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu9g01625 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01625 - - vun:114164157 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01625 9 30971678 30978417 Lapu9g01625 9 30971678 30978417 ECH