Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01614 ATGCGAGGGAGGTTCGACCTCTCCATCTCGATCGCGCGTCGGCAACGCGGTCTGGATCGCGAAATCATCGAGACCTTCCCCACCTTCGTGTACTCCACCGTGAAGAGCCTGAAGATTGGGCGCGCCACGCTAGAATGCGCGGTGTGCCTGAACGAGTTCGAGGAGGACGAAACGCTGCGTTTGATACCCAAGTGCAGCCACGTGTTCCACCCTGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTCTGTCGCGCCAACCTTGTCCCCAAACCCGACGACCCCTCCTTTGTTTCCATCCAAATTCCGGATCCGGTTCAACCCGTTTTAAACTCCCCGGTCCAACCCGAAACCTCGGATTCTCCGAAGACGAATGAATGGATTAATCACAACCGTTCACCGCGGTCAAGGTCAACGGGTTTCAGCATCGCGAGTTTGTTTCCGCGATCTCACTCGACGGGTCACTCGCTGGTTCAACCTGGGGAGAATTGCGAGCGGTTCACTCTGCGTTTGCCCGAGCAAGTTAGGAACCAGCTGATGAGTTCGACGACGTTGAGTCGCACCAAGAGTTGCGGCTTGAGCTTGAGTCTCACCCGCGAGAATAGTGGAAGGAGAGGTTACAGGACCAGAAGCGTTGGTAACAGCCCTAGTCCTCACGTGACAAGAGGCGTGGGTGGCACCAGCAGCAGCCCTCACGTGCGGGGACACGACAGGCGTTGGTTTTTTCGGAGCCCTTCAGCCAAGGACTCCATTAAGGAAGATGTCGGTGAACACAAAGCCTCTGTCATCGCCGCGGTGCTATCCCCGAAGCGCCAAGTGTCCTCCGTCCGGATACATGTGCTCCGAGCCACCACACACGCCCTCACCGCACTTCCCTCCGAAGAAACCATCGCCGCCGTCTTCGCGGTGGGGCAGGGCTCCGACCACCACCCGCGCGCCTGCATCGACGCGCTCATGGACCGCCTGCACCACACCCGCAGCGCCATCGTGGCGCTCAAGTGCCTCTTCACGCTACACAACGTCGTGGTAAAGGGACCCTTCACGTTGAAGGACCAACTCTCGTGTTACCCTTCCTACGGCGGGCACAACTTTCTTAACCTCTCGAACTTTCGCGATGACTCGGACGTCGAATCGGTGGAACTGAGTTCGTGGGTGCGGTGGTACGCGGGCGTGTTGGAACAGAGCCTCACGGTTTCCAGAGTCTTGGGGTATTACCTCAACGCCTCTCGCGAGTCCCAAGAAAGTAAAAAGATTATCCTTTCGAACGCGTCGAATGCGGATTTGTTGTACAAGGTGGAGGCGCTCGTGGGATTCGTCGAACAGATAAGCCACGTGCCTGATTCGCTGCACCTGCAGAGGAACGAGTTGGTGTACGAGGTTGTGCGGTTGGTGGGCGAGAATTATAGGAGTGTGCAGGTTGAGATTTTGCTGCGCGTGGAAGAACTAGGGGAGAGAATGGAGGATTTTGATGTGGGTGAGTTGAACGAGTTGGTAGGGTATTTAGGGAGATTGGAGGAGACCCAGGAGAAGTTGATTCTTTTGTTCGTGAATCGGAGAAGGAACAGTGGCTTCTGGGATTTGGTTCATAAGACTAAGGTCAACGGAGTGACCAAGAAGAGGGGGATTGAAGGGAAGTGGCTTACGGTGGTTGTGAACACCGGCGCCACCGAGTTGACTCCATCCAACAACCCGTTTCTTGACCCGGGGCAACTCAGTCCGGTCCCACGGGTAGATTTTGCAACGGTAAGGTGA 1761 0.565 MRGRFDLSISIARRQRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLVPKPDDPSFVSIQIPDPVQPVLNSPVQPETSDSPKTNEWINHNRSPRSRSTGFSIASLFPRSHSTGHSLVQPGENCERFTLRLPEQVRNQLMSSTTLSRTKSCGLSLSLTRENSGRRGYRTRSVGNSPSPHVTRGVGGTSSSPHVRGHDRRWFFRSPSAKDSIKEDVGEHKASVIAAVLSPKRQVSSVRIHVLRATTHALTALPSEETIAAVFAVGQGSDHHPRACIDALMDRLHHTRSAIVALKCLFTLHNVVVKGPFTLKDQLSCYPSYGGHNFLNLSNFRDDSDVESVELSSWVRWYAGVLEQSLTVSRVLGYYLNASRESQESKKIILSNASNADLLYKVEALVGFVEQISHVPDSLHLQRNELVYEVVRLVGENYRSVQVEILLRVEELGERMEDFDVGELNELVGYLGRLEETQEKLILLFVNRRRNSGFWDLVHKTKVNGVTKKRGIEGKWLTVVVNTGATELTPSNNPFLDPGQLSPVPRVDFATVR* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01614 586 CDD ANTH_N_AP180_plant 280 402 - -
Lapu9g01614 586 FunFam Putative clathrin assembly protein At4g40080 254 408 - -
Lapu9g01614 586 PANTHER CLATHRIN ASSEMBLY PROTEIN 269 518 IPR045192 GO:0048268|GO:0072583
Lapu9g01614 586 Pfam Ring finger domain 45 88 IPR001841 -
Lapu9g01614 586 CDD RING-H2_EL5-like 45 88 - -
Lapu9g01614 586 MobiDBLite consensus disorder prediction 202 231 - -
Lapu9g01614 586 Pfam ANTH domain 281 443 IPR011417 GO:0005543
Lapu9g01614 586 FunFam E3 ubiquitin-protein ligase ATL6 7 94 - -
Lapu9g01614 586 MobiDBLite consensus disorder prediction 114 139 - -
Lapu9g01614 586 Gene3D - 257 408 IPR008942 -
Lapu9g01614 586 MobiDBLite consensus disorder prediction 202 239 - -
Lapu9g01614 586 SMART ring_2 46 87 IPR001841 -
Lapu9g01614 586 SUPERFAMILY RING/U-box 40 96 - -
Lapu9g01614 586 SUPERFAMILY ENTH/VHS domain 279 406 IPR008942 -
Lapu9g01614 586 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Lapu9g01614 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 93 IPR013083 -
Lapu9g01614 586 ProSiteProfiles ENTH domain profile. 271 409 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01614 Lapu-Chr9 30830152 30842092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01614 16 186 Rapid Response to Elicitors AT2G35000 54.301 3.14e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01614 - - gmx:100788852 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01614 9 30830152 30842092 Lapu9g01614 9 30830152 30842092 ECH