Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01611 ATGGCGTTTCTACGTGTTGTGTGCTTAACTTCAGCAAATCAGTTATCTGCTCAACCCTATTCCCACTCCATCTCTTTCTCTTCTTTTTCCCAATCCATCAACTTCCCCAATCGCTCTTCCTTTCGCCTTCCATGCTTATCCCTTCCCACAACCAAACAAACCCCTAATTTCATTCTTAGATGCGTTTCCACTTCCCAACAACAACCCCAGCCGGTTACCGAAGAAGAATTTTCTCGCACCAGGTTGCTCGCTCAGAACGTGCCTTGGACAAGCACCCCCGAGGACATTCGTTCTTTGTTTGAAAAACATGGAAAAGTACTCGAAGTTGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTTGTTGAAATGGGTTCCCCAGAAGAGGCTCTTGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGTCGTGTAATGAAAGTCAATTATGCTCGGCCAAAAAAGAAGAAAACGCCGCCACCGGTGAAACCAAATTCTGGGGTGACGTTTAACTTGTTTGTTGGTAACTTGTCCTATGAAGCCAAGTCCAAGGATCTCAAGGAGTTTTTTGATTCCGGAACTGGTAAAGTTGTTAAAGCTGAGGTTGTATTTCATGAAAATCCTAGAAAGCCATCTGGTTATGGATTTGTGTCATTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTTCTGAGTTCCAAGGAAAGGATTTTATGGGAAGGCCAATCAGGGTGGATCGGGGTCGGCGATTTGTTCAAAAACCAGGGGAGGGGAATGCAAAGTCTCAAGATACTCCTTCCGAGTTGAGTGTGAATGGGGCAGAAGCTCAACAGCCAGCAGAGGGGACTCCAAATTCTGAAAGTACTCCTGAGTTGAGTGTGAATGGGGCAGAAGCTCAACAGCCAGCAGAGGGGACTCCAAATTCTGCAAGTACTCCTGAGTTGAGTGTGGATGGGGCAGAAGCTGACAAAACTGATTGA 990 0.4566 MAFLRVVCLTSANQLSAQPYSHSISFSSFSQSINFPNRSSFRLPCLSLPTTKQTPNFILRCVSTSQQQPQPVTEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMKVNYARPKKKKTPPPVKPNSGVTFNLFVGNLSYEAKSKDLKEFFDSGTGKVVKAEVVFHENPRKPSGYGFVSFKSKKEAEAALSEFQGKDFMGRPIRVDRGRRFVQKPGEGNAKSQDTPSELSVNGAEAQQPAEGTPNSESTPELSVNGAEAQQPAEGTPNSASTPELSVDGAEADKTD* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01611 329 Gene3D - 60 160 IPR012677 -
Lapu9g01611 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Lapu9g01611 329 CDD RRM_SF 86 153 - -
Lapu9g01611 329 MobiDBLite consensus disorder prediction 252 329 - -
Lapu9g01611 329 SUPERFAMILY RNA-binding domain, RBD 173 262 IPR035979 GO:0003676
Lapu9g01611 329 PANTHER OS02G0815200 PROTEIN 64 250 - -
Lapu9g01611 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Lapu9g01611 329 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 247 IPR000504 GO:0003723
Lapu9g01611 329 SMART rrm1_1 175 249 IPR000504 GO:0003723
Lapu9g01611 329 SMART rrm1_1 81 153 IPR000504 GO:0003723
Lapu9g01611 329 Gene3D - 161 268 IPR012677 -
Lapu9g01611 329 CDD RRM_SF 176 249 - -
Lapu9g01611 329 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Lapu9g01611 329 MobiDBLite consensus disorder prediction 261 318 - -
Lapu9g01611 329 SUPERFAMILY RNA-binding domain, RBD 65 166 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01611 Lapu-Chr9 30791309 30793662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01611 80 256 Eukaryotic Initiation Factors Gene Family AT3G16380 31.088 1.35e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01611 - - gmx:100790439 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01611 9 30791309 30793662 Lapu9g01611 9 30791309 30793662 ECH