Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01601 ATGGATTCTCGAAGAGATCGCAGGACAGAAGCTCTTGGAGACCTTCGACTTTTTCCCGACGAAATCATCTGCGCTATTTTGGAACGTTTCACTCCCCGAGATGTTGCTCGCGTCGCTTGTGTTAGCAGTGTGATGTACACACTGTGCAATGAGGAACCACTGTGGATGAGTCTGTGCCTAAAAGGAGCATCTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTGCATAATTTGAATCTGCCCGACAAATACATAGAATATCATCGAGGGCCTTTATATTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGCTGCCATACCACATTGGGTGCATTTTATGCGGATACGGGAAATGTGGCAAGAATAAAAGATATCTCATTGAAGGACTTCTATAATGAGTATGATGCAAAAAAACCGGTTATGGTCAGTGGATTGGCTGATACATGGCCCGCCAGGCATAAATGGACAACTGATCAGCTGTTACTAAACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGGGTGCCCGAAAGATCTCCATGAAGTTCAAGGATTATGTCTCTTACATGAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTGAAGAAGACTTCTTTGACATCGTAGATACGGATAAAAGACCATCCTATAGGTGGCTCATAATTGGACCAGAGAGATCTGGTGCCTCTTGGCATGTGGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGGCGTAAAAGGTGGGCATTATATCCTCCAGGAAAAGTGCCTTTGGGTGTGACAGTTCATGTTAATGAAGAAGACGGCGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTATTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAGTGTACACAGCTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTCACGCAGAATTTTGTGAATTCCAACAATTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGTTGGGTTGCTTGCTCTTGATGAAGATAGTTATGAAAATTTCAGACAGAACATGCCATGTAATGAAAAAAACTCAAGTTACTCTGATTTGTCAAGGAAAGAGAAAAGAGCCAAAACTCAGAAAGAAGCAGATGGTCTATGCTATGAAAGAGCCATAAATGGTGTATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCCTATGATATAAACTTCTTATCCATGTTTTTGGATAACGACAGAGACCACTACAGTTCCCTGTGGAGCTCAGGGAACACCATTGGTCAGCGTGAACTAAGAGAATGGTTATCCAAGCTCTGGATTCAAAAACCAAAAATTAGAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCAACAAGTGGCTAGAATGCCTATCAAGAATTTGTGCCTTCCATAATTTGCCCCCTCCCACTGACGATGAAAGGCTTCCAGTTGGTACGGGTAGCAATCCTGTATATTTAGTGGGAAATTCTGTTGTTAAGATTTTTGTTGAAGGGGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCAGAGTCTGTTGCATGAAGCTAACTCCCCTCTTAGTAAACATATACCTGACGTTTTGGCCAGTGGAATTATTTATCTTGAAAATGGATCTTATACCAATTTAAGTTGGGATGGAAAAGGAGTACCTGATGTCATTGGGAAAAACAATCTGATCAGTAGAAAATGCAGTGTCGAAGATTTCTCATTTGGGGTGTGGGGCAAGAAACAATTAGAGTATAGGAATGCTGGGATGCCGGTGGATGGATCAGGTAGCTTAGCTGGTAACTCAAGCATATGGCCATATGTGATAACAAAACGATGTGAAGGCAATATGTTTGCTGAATTAAGAGACAAACTGACATGGGAAGATACAACAGACTTGGCCTCATTCTTGGGGGAGCAGCTGCGTTACCTTCATCTTTTGTCATATCCGCCTCCAAATATTTCATCTTTCTCTGATATTGTTGATCATGAATTAAACTTGGTTGAGGATAATGCTTGCTTTGCAACTGTTAGCAGTAACTCAAATGTTACAGCAGAATGGTGGCTCTTCACCAGGACCTTAAGAAAGATGAGGAAAGATGTGTCGAGCCGTTTGACTAAGTGGGGAGATCCAATTCCTAGCAAATTGATAGAGAAGATTGACGAATATATCCCACCGGATTTTGCTGAGATTTTTGGAAACTGTGCCTGTAAACCTTGTTCTTGGGTACACACGGACATTATGGATGATAACATTTACATGAAACCAGCATTGGTTTGCTCTACCACTACTGGGAATAATGAAGACATCACCATGGTGGACAATGGTTTATTTAGTAATTATGGAGTAAAGTCATGGTGTCCTAGTCACATTCTTGACTTTAGTGATCTTTCAATAGGTGATCCTCTTGTTGACCTGATACCAATTTATTTAGATGTGTTTAGAGGTAATTCACATCTCCTTAAGCAGTTTTTAGAAAGTTACAAACTTCCTTTTGTTAGTAACGTATCAAGGTGGGAGTCAACAGAGGGTGATCAACAGTTTGGCCGACTTTCATATCTTGCCATGTGTTATTGTATCTTGCATGATGACAATGTATTGGGAGCTCTTTTTAGCATATGGGAAGAACTGAGGTCAGCAGAGTCATGGGAAGAAGTTGAGATGAAAGTGTGGGGGGAACTGAACAATTACAAAGGCTGTCTGTGA 2892 0.4084 MDSRRDRRTEALGDLRLFPDEIICAILERFTPRDVARVACVSSVMYTLCNEEPLWMSLCLKGASGLLQYKGSWKKTALHNLNLPDKYIEYHRGPLYFDGFNSLFLYRRLYRCHTTLGAFYADTGNVARIKDISLKDFYNEYDAKKPVMVSGLADTWPARHKWTTDQLLLNYGDVAFKISQRGARKISMKFKDYVSYMKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFEEDFFDIVDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDYYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRVGLLALDEDSYENFRQNMPCNEKNSSYSDLSRKEKRAKTQKEADGLCYERAINGVSRSYNLWKDGFSYDINFLSMFLDNDRDHYSSLWSSGNTIGQRELREWLSKLWIQKPKIRELIWKGACIALNANKWLECLSRICAFHNLPPPTDDERLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYGLGTELEFQSLLHEANSPLSKHIPDVLASGIIYLENGSYTNLSWDGKGVPDVIGKNNLISRKCSVEDFSFGVWGKKQLEYRNAGMPVDGSGSLAGNSSIWPYVITKRCEGNMFAELRDKLTWEDTTDLASFLGEQLRYLHLLSYPPPNISSFSDIVDHELNLVEDNACFATVSSNSNVTAEWWLFTRTLRKMRKDVSSRLTKWGDPIPSKLIEKIDEYIPPDFAEIFGNCACKPCSWVHTDIMDDNIYMKPALVCSTTTGNNEDITMVDNGLFSNYGVKSWCPSHILDFSDLSIGDPLVDLIPIYLDVFRGNSHLLKQFLESYKLPFVSNVSRWESTEGDQQFGRLSYLAMCYCILHDDNVLGALFSIWEELRSAESWEEVEMKVWGELNNYKGCL* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01601 963 SUPERFAMILY Protein kinase-like (PK-like) 667 894 IPR011009 -
Lapu9g01601 963 SUPERFAMILY F-box domain 8 65 IPR036047 GO:0005515
Lapu9g01601 963 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
Lapu9g01601 963 Gene3D Cupin 114 363 - -
Lapu9g01601 963 Gene3D - 7 87 - -
Lapu9g01601 963 FunFam F-box protein At1g78280 106 363 - -
Lapu9g01601 963 Pfam F-box-like 19 61 IPR001810 GO:0005515
Lapu9g01601 963 SUPERFAMILY Clavaminate synthase-like 123 370 - -
Lapu9g01601 963 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 584 - -
Lapu9g01601 963 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Lapu9g01601 963 SMART cupin_9 210 373 IPR003347 -
Lapu9g01601 963 Pfam Cupin-like domain 143 365 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01601 Lapu-Chr9 30660879 30671812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01601 4 959 Glycosyltransferase AT1G78280 60.597 0.0 1199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lapu9g01601 Cupin_8 2.2e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01601 - - gmx:100792541 1780.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01601 9 30660879 30671812 Lapu9g01601 9 30660879 30671812 ECH