Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01597 ATGAGTGAGACAGCGAGTCTTCATGCACAAACAAGCACACCCATTTCTTCTCTGGATGCCATGGCCCATCACCACCCGCATTATCGGTCACCCTTCGGAGACACAACCTTCACCAAACTGTTCGTGGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAGCAGTTCGGAGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTATGGATTCGTAACATTCTGCGACCAAGAATCTGCAAGAAGAGCATGTGCTGATCCAAATCCAGTAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCTCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGGACAGCACAGAGTGTTCCGGGAGCGGGACCGCCGCCGTCGCTGCCGCCAGCACCCGCTGTTCTGTATCCACCATATGGCTACACAACCTACACTCCTGATTATGGATACCACCACCAAGCCACATTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAACTCTATGGAGCATCATCTTCCACCATGAGCACCCCATATTACTATGGCTACTCTGTGCAAGCACCAAGAAACACTTTTTCCTCACCTCAGGCAAATCGCCTATCACCTGGACCATCTTATCTATACTATCCTACACCCGTGGAAGTCTCATTCTCTGGATATCGTCCACCCCAACAATCGCCAATGAGGCAAACCTTTCCTTCTCCAAGTGATTCACAGAGTCAGCAGCGTATCTCCTCTGAAACAGCAGGCACTTCAGAAAGTTCAAATAGCCAAGGGAAGAACTAA 855 0.4877 MSETASLHAQTSTPISSLDAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPVIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTAQSVPGAGPPPSLPPAPAVLYPPYGYTTYTPDYGYHHQATLYNPQIQQPQYYQQLYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPTPVEVSFSGYRPPQQSPMRQTFPSPSDSQSQQRISSETAGTSESSNSQGKN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01597 284 SMART rrm1_1 39 111 IPR000504 GO:0003723
Lapu9g01597 284 SUPERFAMILY RNA-binding domain, RBD 22 137 IPR035979 GO:0003676
Lapu9g01597 284 MobiDBLite consensus disorder prediction 241 284 - -
Lapu9g01597 284 PANTHER BOULE-RELATED 16 266 - -
Lapu9g01597 284 MobiDBLite consensus disorder prediction 115 144 - -
Lapu9g01597 284 FunFam RNA-binding protein 24-B isoform X1 25 134 - -
Lapu9g01597 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Lapu9g01597 284 CDD RRM_RBM24_RBM38_like 38 113 - -
Lapu9g01597 284 Gene3D - 6 135 IPR012677 -
Lapu9g01597 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Lapu9g01597 284 MobiDBLite consensus disorder prediction 240 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01597 Lapu-Chr9 30608132 30612821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01597 34 114 C2H2 Transcription Factor Family AT2G19380 38.272 4.83e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01597 K25006 - gmx:100811977 491.886