Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01572 ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAACTTCACTCAGATCCTTTCAGGGGTGAACTGATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCATCTTTTTCTTCCTCTCCTTCAAACTCCTCTTTCCCCTCTACTTCTTACTCTGCTTCTCCCAACTACTTCCCCTGCTCACCCTCCTTCCCTAATGTTTACTCAAACAACTGTTCCGCGTCGATGACCCCTGTATTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGGGCAAGGGCAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGGCCCAAATCCAGATCCAGAGCCAGCAGCAGCAGAATCATAACACCCTGAACTTCCTCGGGCCCAGGCCAATCCCTATGAAGCACGTGGGCATGCCTCCCAAGCCCACCAAGCTGTACCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGGACCAGGCTTTGGTTGGGAACATTCGATACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCTAGGCTGAACTTTCCCAACCTCCGCCACCAGGGTTCCTCGGTGGGCGGAGACTTCGGGGAGTACAAGCCGCTCCATTCCTCTGTGGACGCCAAGCTTCAGGCCATTTGCGAAGGCCTGGCTGAGTTGCAGAAACAGGGGAAGACGGAGAAGCCTCAGGGTTCGTCGAAGAGGTCGCGATCCAAAGTCGCCCCTCCGCCAGAGAAGGCTGATTCCGACAAGGGTTCGGACGACAACACGAACAACAACCCTTGCAAGGTGGAAGCTGCCTCGTCTGGGGTTACGACGGAGAGCGAGGGATCTGAAGGTTCTTCGCCTCTGTCGGGTCTGACATTTGCTGACGTTAGCGAGCCTCAGTGGGAAGGTGATTCGGATAATTTTAATCTCCAGAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 1062 0.5452 MAAMMGFYSSTEFQLHSDPFRGELMEVLEPFMKSPSSTPSFSSSPSNSSFPSTSYSASPNYFPCSPSFPNVYSNNCSASMTPVFADGLSLSNTQNIIGFGQGQPTSLLGLNHLTPSQISQIQAQIQIQSQQQQNHNTLNFLGPRPIPMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGDFGEYKPLHSSVDAKLQAICEGLAELQKQGKTEKPQGSSKRSRSKVAPPPEKADSDKGSDDNTNNNPCKVEAASSGVTTESEGSEGSSPLSGLTFADVSEPQWEGDSDNFNLQKYPSYEIDWDSL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01572 353 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Lapu9g01572 353 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Lapu9g01572 353 MobiDBLite consensus disorder prediction 262 287 - -
Lapu9g01572 353 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Lapu9g01572 353 MobiDBLite consensus disorder prediction 288 323 - -
Lapu9g01572 353 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Lapu9g01572 353 MobiDBLite consensus disorder prediction 255 340 - -
Lapu9g01572 353 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Lapu9g01572 353 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Lapu9g01572 353 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Lapu9g01572 353 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Lapu9g01572 353 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Lapu9g01572 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01572 Lapu-Chr9 30291453 30293321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01572 1 353 AP2-EREBP Transcription Factor Family AT1G78080 52.561 5.57e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu9g01572 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01572 K09286 - gmx:732559 462.611