Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01550 ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTGGCATGTGGGGTGACGGATTTAAAGTTGATGGTGGCCTGAATTCAATTGCTTCCCCAATATTAATGGTTGACACTAATATGGAGAGCAAGTCTGAATATATTCCTCAAGAATCAGGAGAGCCTTCTGGAGCCGATCACGAGACCACAGATAAAGATGTTAATAAGATGAGAAGACGTCTAGCTCAGAATAGAGAGGCTGCTCGGAAAAGTCGGCTGAGGAAAAAGGCGTATGTTAAACAATTAGAATCAAGCCGTATGAAGCTCATGCAGTTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTACATGGGCACTGCATTAGATGCCAGCTATATAGGATCAACATCAGAAACAGTAAACCCAGTTATTGTTGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACACAGGCGGAATGAAGAGCTTAGACATGCATTTCAAATGCAAGCACCTGATGTTCAGCTCAATGTAGTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTCTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTTCTCTATTTACTCTCTGGTGTGTGGAAAGCATCAGTCGAGCGCATCTTCCTTTGGATTGGAGGCTCTCGTCCATCACAGCTTCTAAACATCATCGTACCGCAACTTGAGCCTTTGACTGATCAACAAATTGTTGGTATTAACAATCTCCGTCTATCATCTCAGCAAGCTGAAGATGCTCTTTCACAGGGCTTAGAAAAACTTCAGCAGAGTTTAGTCCATGACATGGCAGTTGATCCATTGAGTGTAGGAAACTTCGGACTTCAGATGGCTCTTGCTATGGACAAATTTGAGGCACTAGAAGGATTTAAGTCAAATGCATTCTATCCTCCACAGGCAGATCACCTAAGACAACAAACTCTGCTTCACATGTCACGCATCCTCTCAACTCACCAAGCTGCTCGTGGTTTGCTGGCTCTTGGGGAATACTTTCACCGTCTTCGCTCTCTTTGCTCTCTTTGGGCTTCTCGTCCATGTGAACTTCCCTAA 1077 0.4355 MKMDIYEPFQQVGMWGDGFKVDGGLNSIASPILMVDTNMESKSEYIPQESGEPSGADHETTDKDVNKMRRRLAQNREAARKSRLRKKAYVKQLESSRMKLMQLELEIGKARKQGLYMGTALDASYIGSTSETVNPVIVAFEIEYGQWVEEQHRRNEELRHAFQMQAPDVQLNVVVQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVGINNLRLSSQQAEDALSQGLEKLQQSLVHDMAVDPLSVGNFGLQMALAMDKFEALEGFKSNAFYPPQADHLRQQTLLHMSRILSTHQAARGLLALGEYFHRLRSLCSLWASRPCELP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01550 358 FunFam BZIP family transcription factor 66 115 - -
Lapu9g01550 358 Gene3D - 66 115 - -
Lapu9g01550 358 Coils Coil 86 113 - -
Lapu9g01550 358 PANTHER TRANSCRIPTION FACTOR TGA9 3 356 - -
Lapu9g01550 358 Pfam bZIP transcription factor 67 96 IPR004827 GO:0003700|GO:0006355
Lapu9g01550 358 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Lapu9g01550 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 65 100 IPR004827 GO:0003700|GO:0006355
Lapu9g01550 358 ProSiteProfiles DOG1 domain profile. 137 353 IPR025422 GO:0006351|GO:0043565
Lapu9g01550 358 Pfam Seed dormancy control 156 229 IPR025422 GO:0006351|GO:0043565
Lapu9g01550 358 SUPERFAMILY Leucine zipper domain 67 100 IPR046347 GO:0003700|GO:0006355
Lapu9g01550 358 SMART brlzneu 62 123 IPR004827 GO:0003700|GO:0006355
Lapu9g01550 358 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01550 Lapu-Chr9 29945096 29952648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01550 3 356 Calmodulin-binding Proteins AT1G22070 53.639 6.69e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lapu9g01550 DOG1 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01550 K14431 - gmx:100794268 601.668