Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01543 ATGCCTCGACAACCGCCACCACCGCTGCCGCAGCAGCCCGGCGCACTGGAGCCGGAGATATGGCGAGCCTGCGCTGGACCTTCTGTAGAAATCCCGAAGCCAAATTCTATGGTGTACTACTTCCCTCAGGGACACTTTGATCAAGCCTTTTCGGCGCCGCGAAACCTCTCCGCTCGCCTTCTTGCCAAACCCTTCGTTACCTGCAACGTCGAGTCGGTTCAATTTCTTGCCGATCCTCTTACCGACGAAGTTTTCGCCAAGATGTTTCTCCGGCCTGTCGTTAATAACTTCGTTGCGGAACCCTTCCGTACTTCTGCTGCTGCTCCTCCTCCGCGAAAGGACGACAACGAGGTCGTTTCGTTCGCCAAGATTCTCACGCCGTCTGATGCCAACAACGGCGGGGGCTTCTCAGTGCCTAGGTTCTGCGCGGATTCCATCTTCCCGCCGCTTAACTTCAAGGACGACCCGCCCGTGCAGAACCTCTCCGTCACCGACGTGCACGGCTTCACCTGGGAGTTCCGCCACATTTTCCGCGGGACCCCGCGCCGTCACCTGCTCACCACCGGCTGGAGCACGTTCGTGAACAACAAGAAGCTCGTCGCCGGGGACTCCGTCTTGTTCATGAAGAATGCCGCCGAACGTTTGTTCGTCGGAATTCGCCGTGTCACGCGCCTCGCTCCTGGAAAAGGCGGCGGCTGCGCGAAGCTCAGGTTAATTCAGGAGGACGAGGAAAAAGAAGAGGAAGAAGACGATGAGAAGCCGAGGGAGGTTTTCTCGAGGGACGGGAAGGGGAAACTGTCGGTTAAGGTGGTTACGAAGGCGGCGGAGGCAGCGGTGCGGAACCTGCCGTTTGAGGTTGTTTACTACCCCAAGGCTGGTTGGTCAGAGTTTGTGGTGAAGACTGAAACGGTGGATGCGGCGATGAGGATTCCATGGAGCGAGGGAATGAGAGTGAAGATGTCTATAGAGACCGATGATTCGTCCAGGATGACGTGGTTTCAGGGAACGGTCTCTGCTGTCTCATCTCACGATAGTGGTGGCCAATGGTGCGGTTCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGGGATGCAGAATGCAAAGTGGGTTAGCCCTTGGCAGGTGGAACTTGTTTCCACCACACCTGCCCTTCATTCAGCATTCCTCTCAACAAAAAGGTTCAGAACGGCTCATGGTTATGAGATGTTTAATGACGGCTCAACAAAAAGGTTCAGAACGGCTCATGGTTATGAGATGTTTAATGACGGAGAGGGAGGTCCCTTTCCTATGACCGGATTCCCTAATTCAGCAGTGGAACACCTGAATCAGGTATTCTGGGCTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATGCATTTTCGGCATCAAGTTTTTCCAATTATCCAGGGGACATATCTCGTATGTGTCAGGCTAATTCCAGAGAAAACAGTACATTTAAAAAGCTGAAAAATTTATCGACAGAATATGTTGGCCGCTCTCCATCTGATGAATTATCAACTGATAGCCGTAGTAGTTTCCATTCCTGTGTCACAGATCCTGTTCGGAATCACAACAGAAATGCAATAAAACTCGCGTCTGATTCAATTCAGCTATTTGGTGCGGTCATTTGGAAAGAACAGCCTGCTCAAAATGGTTTGACAGGCACTGGTTGTGCTAGCACAAGAGATAAAAGCCTTGGCAGATGA 1725 0.5246 MPRQPPPPLPQQPGALEPEIWRACAGPSVEIPKPNSMVYYFPQGHFDQAFSAPRNLSARLLAKPFVTCNVESVQFLADPLTDEVFAKMFLRPVVNNFVAEPFRTSAAAPPPRKDDNEVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNFKDDPPVQNLSVTDVHGFTWEFRHIFRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFMKNAAERLFVGIRRVTRLAPGKGGGCAKLRLIQEDEEKEEEEDDEKPREVFSRDGKGKLSVKVVTKAAEAAVRNLPFEVVYYPKAGWSEFVVKTETVDAAMRIPWSEGMRVKMSIETDDSSRMTWFQGTVSAVSSHDSGGQWCGSPWRMLQVTWDEPEGMQNAKWVSPWQVELVSTTPALHSAFLSTKRFRTAHGYEMFNDGSTKRFRTAHGYEMFNDGEGGPFPMTGFPNSAVEHLNQVFWAYDTFPAGMQGARHDAFSASSFSNYPGDISRMCQANSRENSTFKKLKNLSTEYVGRSPSDELSTDSRSSFHSCVTDPVRNHNRNAIKLASDSIQLFGAVIWKEQPAQNGLTGTGCASTRDKSLGR* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01543 574 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 551 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu9g01543 574 SMART B3_2 121 223 IPR003340 GO:0003677
Lapu9g01543 574 Pfam Auxin response factor 274 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu9g01543 574 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Lapu9g01543 574 Gene3D - 312 386 - -
Lapu9g01543 574 FunFam Auxin response factor 119 223 - -
Lapu9g01543 574 CDD B3_DNA 120 221 IPR003340 GO:0003677
Lapu9g01543 574 SUPERFAMILY DNA-binding pseudobarrel domain 114 229 IPR015300 -
Lapu9g01543 574 Gene3D - 118 222 IPR015300 -
Lapu9g01543 574 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01543 Lapu-Chr9 29894053 29897510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01543 16 559 B3 DNA Binding Superfamily AT1G77850 45.668 2.25e-153 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu9g01543 B3 1.6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01543 - - gmx:102662128 704.516