Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01539 ATGCTCCGCTTCTTGTGTACCTTGTTGTTGCCGGCGATGACCGGGGGCGGATGTCACCCGTGGAAGGACATGGCGGAGGGAGGGGATGTCGCCGCCGTGGGAAGGCCCTACAGGTCTGACTTTGTGGCAGAAATTCCTCGTGATTCTGCCGTACAAGAAATTGATTACTTGTCCCAGGCTAGGAAAGCTCTCACTGAGCGTTCCCCCTTTGATGTTGCTGAAGAAACTTCGACATCTGCTGCGCTTACTCTGCCCAGTGGGTTGGCTGGCTTGCTGAACCGGCAGACTGATAACAGGAGACGTCCTAAGAAGTCCCATTCCGGTGGGCATAAGAGGAAATCTTCCTCTAGGGCTAACCAGAAGAAGTCCGAGGATTCTAACATTTGGATTGAGACTGAGGAGTACTTTAGGGACTTAACCTTGGCTGATATTGACACCTTGTTTGAGTTCTCTCGAACTTCTAGTTTAGCTTCTCAGGACTATTTCTCTATTCCGCTTTTGGGAAATGTTCCCAGGTACAATGCAGTTACTAGTAATAGCGAGAATGAAACGGAGCCTGTTCCAAAATTCAATGTAGGAGTCAGTAGCGATGATGGGAAGAAGGGTGACTTAGTGGGCAGTGAGGATACGAATAAGGTTGGTGAATCTGTGGAAAATGAGGATGAATTGTTGGTAATTGAGGCAGTTGACGATGTTGCTGTTGAACAATCTTGTCCTCAGGACAAGAGTCAAGACGAACCTGATTCTGCTATTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAACTTTCTTTGAGTTCTGAGCGCCCCTCCAAGAAAAGGAGGCTTTTGGGAGTTGAAGCTGGTTTGGAGAAAGTTATAATGACTTGTCCTTGTGATGAGGGTCAACCGATTTGCCATTATTGTGGCAGGGGAGACACTGGCAGCGACTCCAATCGGTTAATTGTCTGCACATCTTGTAAAATGGCAGTTCACTCGAAGTGCTATGGTGTGCAAGATGTAGATGAGGCTTGGCTGTGCTCCTGGTGCAAGCAAATGGGTGATGTTGATGAATCAGTCAATCCTTGTATTCTTTGCCCGAAGAAGGGTGGTGCGTTAAAACCAGTTAATACCTGTGTGGAAGGTGCTGGCTCTGCTCCATTTGTGCACTTATTTTGCTCGCTGTGGATGCCTGAGGTTTATGTAGATGATTTGGAGAAGATGGAACCTGTTATGAATGTGGGGGAAATCAAGGAAACCAGGAAGAAATTATTGTGTAGTGTTTGCAAAGAAAAGTGTGGTGCATGTGTTCGGTGCAGCCATGGAAGCTGCAGAACTTCTTTCCACCCTTCATGTGCAAGGGAAGCTGGACACAGGATGGAGGTTTGGGCAAAGTACGGTAATGATAATGTTGAGTTGCGGGCTTTTTGTTTGAAACACTCAGATCTACCAGAGAGCAGAAGTATCTTGCCACAGGAAGGCTTTATTGAGGTTAGAAATGAATTTTCTGAAGCCAATGACCTTCCAGTGACATTGCCAGTGAGTGGTGAACACAACTTGAGAGATTGCAGGAATGGAGGATTAGTCTCTGATAGTGATCCAGACAAATTGAACCATAGTGATGAACCACCAGATGGAGGATTACCTGAATGCAGGTTAAGTGCTCACATGTTGGGATGTGGTGCCATGTCCCAACAAAATGTTGAAGTGGTAGGGAGAGTGAATGAGAATGTTGATGCATCTGATTCTCTCAATTTTGCTCTAGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGACGTGGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATACAAATGAAGCCTATATGGCCCCTGATGTCCGACACAAAATAGTGAATTGGCTAAAAGCACATGTGTATACCAGTGCATTTCAGAAGGGTTTAAAGGTCAAATTCAAACCAGCCAATGCATCCAAAAATGATAGTGGAGCCACAGATGGCGCTGATACTTTACCAATATCAGACTCTGGTTTGCTGGATCCTGTTGCTGTTAAGTCAGTTCCACCAAGGAGGAGAACAACCAATAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCTGAAGGGGTTACAAGTGAGAATGGGATGCCGGTGCACATGTGCAGAGTAGGTCAGTCCATCTGTGACAATCCAACAAGTTCTAATGAAGTGAGCATCCCCAATGCAACTGAAACGAACATAGCCAAGTCTGAGGATATTTTTCGTGAAGTTCAAGGCAATGTTGATAAACCTAAAAAATCCTGCTTATCTGGGTACGTTTCAGAAGACAAGTGTAGTATTTGTTTGCAAAATCCTTCTATGCTTTCTGATCAGCACTGCCTTGTTCATTCTGCTTCAGAACCTTCTGATTCTGGTTTCATAAAGGGTGCAGTCTCTAGTTACATTCATCCATTCATCAAAAAGAAATTGCTGCAGATTCGCGATGGGGTGCCCTTGGAGGACATTATATGTTTAAGTGACAAGGGAAATTCGGGTTTGGTTGATTCATTTGGGGCTAGTGGCTGCTCAAATAGCCAAAATCAGAACTTAACTTGCAGTGAAATATCAAAGCCTGACGACGTAAAGACGGAGCAATCGGTTAGGACTGAAAAAATGGAACTTTTGGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGTATAGGTTATTGCAGAATGTGGTTGCAAAAAGGAGGCGTATTGATAATTTAATCTACAATGTTGCCAAGAGTTTACCGCAGGAGATTGATAAGGCTCATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTACGTGATCTTAGAGAGGCAAAAAAGCAGGGCAGAAAAGAAAGAAAGCACAAGGAAGCACAGGCAGTATTGGCTGCTGCAACTGCTGCTGCGGCAGCATCTACTAGGTCATTCCGAAAAGACACCTTAGACGAATCTATCCAACAGGAGAATTTGTTAAAATTGGACAATTTGAATGGAAGGACTGGAGCTTGTTCTCAACCAATGCCTCGAGCCAAAGAGACACTTTCGAGAGTAGCTGTAACTAGAACTTCATCAGAGAAATATTCAGATTTTTGCATGCCAACCTCAGATTTTTCTAAGGAGCAATGTAAATCATGTGATATTTGTAGACGATCAGAGACTATTTTAAACCCTATCCTGGTCTGCTCTGGTTGCAAGGTTTCAGTCCACCTAGATTGCTATCGCAGTGTGAAAGAAACAACAGGTCCATGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCTGGGGCATCTGCTATCAATTTTTGGGAGAAACCTTATGTTGGTGTTGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTGATGGTCATTGGATTCACGCTTTCTGTGCTGAGTGGGTTTTGGAGTCTACGTTCGGAAGAGGACAAATAGATGCTGTTGAAGGAATGGAAAATGTCCCAAAAGGAGTTGACATTTGTTGCATCTGCCATCGCAAGAATGGTGTATGCATGAAGTGTTGCTATGGGCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGCAAGGACTTCTGGTGGCAAGGTTCAACACAAAGCTTACTGTGAAAAGCATAGTTTGGAGCAAAAAGCAAAGGCTGAGAGTCAAAAACACGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGTGAAAAAATAAAGCGGGAATTAGTACTATGTTCACATGACATACTCGCCTTTAAAAGAGATAATGTTGCGAGGTCTGTGCTAGTTCATAGCCCTTTCATCCTTCCAGATGGTAGTTCTGAATCAGCTACAACATCCCTTAAAGGGAATACAGAGGGATACAGATCATGCAGTGAACCGCTCCAAAGATCAGATGATGTTACTGTTGACAGTTCTGTTTCTGCTAAGCACCGGGTCAGAGTCACCATATCTATGGACGCGGACCATAAATTGGATGATGACTGTTCAACCTCCCAAAGCAAATATAACCACAAAATTCCAGAAAGAACACAATTTTCTGGCAAGAAGATTCCTCATAGAGCTGCTGCATCACGAAATATTTCAGATGAAGGTGGATGGAGATCCAAATCTAGAAAGCATGCTGAAACATTTGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCAAAAGGATATGCATATGTTCCTGCTGATTGTCTGTCAAATGACAAGCACTCTAACGAGGATATATATGCTAGTGGGCCAGTGGAGCATGACAGGTAG 4380 0.4313 MLRFLCTLLLPAMTGGGCHPWKDMAEGGDVAAVGRPYRSDFVAEIPRDSAVQEIDYLSQARKALTERSPFDVAEETSTSAALTLPSGLAGLLNRQTDNRRRPKKSHSGGHKRKSSSRANQKKSEDSNIWIETEEYFRDLTLADIDTLFEFSRTSSLASQDYFSIPLLGNVPRYNAVTSNSENETEPVPKFNVGVSSDDGKKGDLVGSEDTNKVGESVENEDELLVIEAVDDVAVEQSCPQDKSQDEPDSAISLEWFLGCRNKLSLSSERPSKKRRLLGVEAGLEKVIMTCPCDEGQPICHYCGRGDTGSDSNRLIVCTSCKMAVHSKCYGVQDVDEAWLCSWCKQMGDVDESVNPCILCPKKGGALKPVNTCVEGAGSAPFVHLFCSLWMPEVYVDDLEKMEPVMNVGEIKETRKKLLCSVCKEKCGACVRCSHGSCRTSFHPSCAREAGHRMEVWAKYGNDNVELRAFCLKHSDLPESRSILPQEGFIEVRNEFSEANDLPVTLPVSGEHNLRDCRNGGLVSDSDPDKLNHSDEPPDGGLPECRLSAHMLGCGAMSQQNVEVVGRVNENVDASDSLNFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVRHKIVNWLKAHVYTSAFQKGLKVKFKPANASKNDSGATDGADTLPISDSGLLDPVAVKSVPPRRRTTNNIRILKDNKVICSSEGVTSENGMPVHMCRVGQSICDNPTSSNEVSIPNATETNIAKSEDIFREVQGNVDKPKKSCLSGYVSEDKCSICLQNPSMLSDQHCLVHSASEPSDSGFIKGAVSSYIHPFIKKKLLQIRDGVPLEDIICLSDKGNSGLVDSFGASGCSNSQNQNLTCSEISKPDDVKTEQSVRTEKMELLEFSPQDELEGELVYFQYRLLQNVVAKRRRIDNLIYNVAKSLPQEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRSFRKDTLDESIQQENLLKLDNLNGRTGACSQPMPRAKETLSRVAVTRTSSEKYSDFCMPTSDFSKEQCKSCDICRRSETILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGASAINFWEKPYVGVECALCGGTTGAFRKSSDGHWIHAFCAEWVLESTFGRGQIDAVEGMENVPKGVDICCICHRKNGVCMKCCYGHCQTTFHPSCARSAGLYMNARTSGGKVQHKAYCEKHSLEQKAKAESQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDNVARSVLVHSPFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKHRVRVTISMDADHKLDDDCSTSQSKYNHKIPERTQFSGKKIPHRAAASRNISDEGGWRSKSRKHAETFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNDKHSNEDIYASGPVEHDR* 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01539 1459 SUPERFAMILY FYVE/PHD zinc finger 1043 1096 IPR011011 -
Lapu9g01539 1459 Coils Coil 946 966 - -
Lapu9g01539 1459 ProSiteProfiles Extended PHD (ePHD) domain profile. 1117 1226 IPR034732 -
Lapu9g01539 1459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 348 IPR013083 -
Lapu9g01539 1459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1040 1101 IPR013083 -
Lapu9g01539 1459 MobiDBLite consensus disorder prediction 1380 1404 - -
Lapu9g01539 1459 ProSiteProfiles Extended PHD (ePHD) domain profile. 353 474 IPR034732 -
Lapu9g01539 1459 Pfam PHD-finger 312 344 - -
Lapu9g01539 1459 Pfam PHD-finger 1063 1096 - -
Lapu9g01539 1459 ProSiteProfiles Zinc finger PHD-type profile. 1049 1098 IPR019787 -
Lapu9g01539 1459 MobiDBLite consensus disorder prediction 1304 1328 - -
Lapu9g01539 1459 SUPERFAMILY FYVE/PHD zinc finger 292 361 IPR011011 -
Lapu9g01539 1459 ProSiteProfiles Zinc finger PHD-type profile. 296 346 IPR019787 -
Lapu9g01539 1459 CDD ePHD 1120 1225 - -
Lapu9g01539 1459 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lapu9g01539 1459 MobiDBLite consensus disorder prediction 516 541 - -
Lapu9g01539 1459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1227 IPR013083 -
Lapu9g01539 1459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 476 IPR013083 -
Lapu9g01539 1459 MobiDBLite consensus disorder prediction 178 210 - -
Lapu9g01539 1459 Pfam PHD-zinc-finger like domain 355 473 - -
Lapu9g01539 1459 Pfam PHD-zinc-finger like domain 1118 1225 - -
Lapu9g01539 1459 PANTHER PHD FINGER PROTEINS 104 982 - -
Lapu9g01539 1459 MobiDBLite consensus disorder prediction 99 117 - -
Lapu9g01539 1459 MobiDBLite consensus disorder prediction 91 124 - -
Lapu9g01539 1459 SMART PHD_3 1172 1226 IPR001965 -
Lapu9g01539 1459 SMART PHD_3 1051 1096 IPR001965 -
Lapu9g01539 1459 SMART PHD_3 418 474 IPR001965 -
Lapu9g01539 1459 SMART PHD_3 298 344 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01539 293 480 C2H2 Transcription Factor Family AT3G14740 30.729 4.48e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu9g01539 zf-HC5HC2H_2 1.8e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01539 - - vum:124846061 2484.52