Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01511 ATGTCACTGAGTCCTCCCAGAGAGCGATACAACGGGCATGCCCAAAGGCGAGCCAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCACCCGCATGGTCCGCGTAGCAGTGGATAACAACCCCTCAGAGGTCACGTGTCCGCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTGGTCGATTTCACTACCCCAGACCCCTCCCCAGAAGCACGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATCCGCCGCTTCCCGGGTCTCCTCCAACCCGAACCTGAAGAGGTCCCCGTGCACCACCACCACCGCCGACGTCGCCTCCGCCGCCGCCAACCCGAACCCGAACCCGAACCCGTCCCTGAACCCCAACACCACCGCCCTCGCACGTGGATTGTCTTCCAGCCTATAGACCCACCCAACCCCTTCCAGCCCATTAACGACATTCCTAACCACCCTGGCCCAGGCCCATTACCATTCCCGCTCCCGCGCGCCGTGGACACGCGCGACTATTTCTTGGGGCCCGGACTAAACGAACTCATCGAACAGATAACCGAGAACGACAGACAGGGTCCCCCGCCGGCCCCGGAGAGGGCCATCGACGCGATTCCGACGGTGAAAATTGCGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTCGAAGTTGGAGGAAAAGCGAGGGAACTTGCGTGCAAACACATATATCATTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGCCCGGTGTGCCGTCACGAGGTTTCCGTGCCGTCTTCTTCTTCGGAGGATGATGAGTGTGTTGATGTTAGCGGAGACGAAGGTAGGTTGCGGAGGTGCTTGAGGTGGACCCGTCGTTTTACTTCGGTTTGGCCTTTCAATTCAAGGTATCGACGGGTTCATCCTCAAGGAAATAATAATGTTGCTGCTGCTTCTTCCAGGGTGTTTCATACTTGTGTTTCTGATGTTGTCACTGTTGTGGTGTGCTGGTGCTGA 1047 0.5712 MSLSPPRERYNGHAQRRARPTFQMYWCFQCTRMVRVAVDNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPGLLQPEPEEVPVHHHHRRRRLRRRQPEPEPEPVPEPQHHRPRTWIVFQPIDPPNPFQPINDIPNHPGPGPLPFPLPRAVDTRDYFLGPGLNELIEQITENDRQGPPPAPERAIDAIPTVKIASAHLKENSQCPVCQEEFEVGGKARELACKHIYHSDCIVPWLRLHNSCPVCRHEVSVPSSSSEDDECVDVSGDEGRLRRCLRWTRRFTSVWPFNSRYRRVHPQGNNNVAAASSRVFHTCVSDVVTVVVCWC* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01511 348 MobiDBLite consensus disorder prediction 120 134 - -
Lapu9g01511 348 FunFam E3 ubiquitin-protein ligase RING1-like 191 275 - -
Lapu9g01511 348 MobiDBLite consensus disorder prediction 99 135 - -
Lapu9g01511 348 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Lapu9g01511 348 Pfam Ring finger domain 227 269 IPR001841 -
Lapu9g01511 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 275 IPR013083 -
Lapu9g01511 348 SUPERFAMILY RING/U-box 208 275 - -
Lapu9g01511 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 125 272 - -
Lapu9g01511 348 SMART ring_2 228 268 IPR001841 -
Lapu9g01511 348 Pfam zinc-ribbon 23 57 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01511 Lapu-Chr9 29523906 29525182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01511 200 318 C3H Transcription Factor Family AT1G68180 44.538 9.68e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01511 K11982 - gmx:100787399 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01511 9 29523906 29525182 Lapu9g01511 9 29523906 29525182 ECH