Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01484 ATGGAAGGTGAGGAGGGAAAACAGTGTTCCCACAAAAACCCTTACGTTGAAATAGAAGAAGTTGACTTTGATTTTATTCTAGCATTGAGCATGCAAGAACAAGAGAGAGAGTTCACAATGCTTTCAACTATTGAAAGTGAAAGTGATGAATATCTATGTGACTCCTCTGTTGACAATGAAGATGATGGTGATCCTGAATTCGTAGAGAGCCAAGAGTTTGATACTGACCTTCAGTTTCTTGAAGATGAAGAAAGCAATGATGATGATGATGATGAAGAAGAAGAAGAAGAAATGGAAGTGGAAGAAGATGAGATTGATCCAGACGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTCATAGGAGAAGAACCGAGAGGCCTATCAGCAAATGAAATCTCTTTGTGCTTGAACCCTTGTACTTTCCAACGTGCTGAAAGAAAAAGTGGAATCGATCGTTGTGTGATTTGTCAGGTTGAATATGAAGATGGTGAAGCACTGGTGGCACTTCAATGTGAGCACCCTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATGAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCAAACATGGCTTCCAACGCTTAA 627 0.3955 MEGEEGKQCSHKNPYVEIEEVDFDFILALSMQEQEREFTMLSTIESESDEYLCDSSVDNEDDGDPEFVESQEFDTDLQFLEDEESNDDDDDEEEEEEMEVEEDEIDPDELSYEELMELGEFIGEEPRGLSANEISLCLNPCTFQRAERKSGIDRCVICQVEYEDGEALVALQCEHPYHADCISKWLQMKKVCPICSNEVSTPNMASNA* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01484 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 205 IPR013083 -
Lapu9g01484 208 SMART ring_2 155 195 IPR001841 -
Lapu9g01484 208 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 7 101 IPR043312 -
Lapu9g01484 208 FunFam E3 ubiquitin ligase BIG BROTHER-related 121 202 - -
Lapu9g01484 208 MobiDBLite consensus disorder prediction 51 106 - -
Lapu9g01484 208 Pfam Ring finger domain 154 195 IPR001841 -
Lapu9g01484 208 MobiDBLite consensus disorder prediction 47 106 - -
Lapu9g01484 208 SUPERFAMILY RING/U-box 154 202 - -
Lapu9g01484 208 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01484 Lapu-Chr9 29240069 29240695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01484 102 199 C3H Transcription Factor Family AT3G63530 51.000 1.68e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01484 K19045 - gmx:100526881 326.635