Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01461 ATGGCGCCAATCATGCAGAGCTCTCAGCAATGGGTCGAGAAATACCGACCAAAGCAAGTGAAAGATGTTGCCCACCAAGAGGAAGTTGTTCGAGTGCTAACAAACACACTTGAAACTGGAAGTTGCCCCCACATGCTCTTCTATGGTCCTCCTGGCACTGGAAAAACAACTACTGCCCTTGCAATTGCCCATCAGCTTTTCGGGCCTGAGCTCTATAAGTCGAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGTACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTAACAAGCGTAAGAATGGTCATCTTTGTCCACCATTTAAGATTATTGTTCTAGACGAGGCTGATTCAATGACAGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTGAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAAATCATGAGCAGCCGGATATTGTACATATGCAAAGAAGAGGGACTTCTTCTTGATGCTGAGGCTCTTTCAACCCTTAGTTCTATTTCTCATGGAGACCTTCGCCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTATTCCAGAAAAAGTTGTGGAGGCAGTTCTTCAGGCTTGCAGAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCTGCTCAAATGCTTACTCAGTTATTTGAAGCCATTGTTGAAGAAAATGATATATCAGATGAACAGAAAGCAAGAATATCCAAGAAGCTGGGCGAAGCTGATAAGTGTCTAATTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTTGTCAGCAATACAATGAAGGCTTTTAGCAACATGCCAGAAGGATTTGCTTACGAGAGTTAG 1029 0.4247 MAPIMQSSQQWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKRKNGHLCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYICKEEGLLLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVIPEKVVEAVLQACRSGNFDLANKEVNNFIAEGYPAAQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLIDGADEYLQLLDVVSNTMKAFSNMPEGFAYES* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01461 342 Gene3D - 175 237 - -
Lapu9g01461 342 Gene3D - 2 173 IPR027417 -
Lapu9g01461 342 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Lapu9g01461 342 CDD HLD_clamp_RFC 174 233 - -
Lapu9g01461 342 Gene3D - 240 329 - -
Lapu9g01461 342 FunFam Replication factor C subunit 5 3 174 - -
Lapu9g01461 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Lapu9g01461 342 CDD AAA 26 166 - -
Lapu9g01461 342 Pfam Replication factor C C-terminal domain 240 325 IPR013748 -
Lapu9g01461 342 FunFam Replication factor C subunit 4 176 239 - -
Lapu9g01461 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 232 IPR027417 -
Lapu9g01461 342 FunFam Replication factor C subunit 4 240 329 - -
Lapu9g01461 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 321 - -
Lapu9g01461 342 SMART AAA_5 41 190 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01461 Lapu-Chr9 28981595 28988311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01461 1 338 Core DNA Replication Machinery Family AT1G21690 76.696 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01461 K10755 - gmx:100798331 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01461 9 28981595 28988311 Lapu9g01461 9 28981595 28988311 ECH