Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01460 ATGTCCACACAGAATCGTCGTTCGTCGTTTTCGTCTTCAACGACGTCGTCTTTGGCCAAGCGCCATGCATCCACCGCTTCCTCCTCCTCCACCTCCTCTTTAGCGGTTCCTTCCAACATTCCCAAGAAGCGTCCTCCTCTCTCCAATCTCACCAACACCGTCGCTCACCGCAACTCTTCCTCTTCGGTTCCGTGCGCAGCCAAACTCGCGAAGACGAAGAAAGAGGTTGTTCCGCCCTCCTCAGGCAATAAAAGGCCCACTTTGGTGAATGTCAAACCTGCTAATGCAGTTGTTTTTCCCAAGGCTAATTCTCTCCCTGTGAGGAATGAAGCTCCTCCTCCTCCTCCCCCTCCTCCACTCGTTGTCACTGTTACTGTTCCTCCTCCGGTGCTGGATGTTTCACCTAGTAAATCAGATGCAATGTCGGTTTCTATGGATGAGTCTATGTCTTCTTGTGATTCGTTCAAGAGTCCTGACATTGAATATGTGGACAATAGTGATGTTGCGGCTGTTGATTCAATTGAGAGGAAGACATTCAGCAATCTCAACATCTCTGATTCTACCGAATCAGGCAACATTTGTAGTAGAGACATACTTGTTGAGTTGGAAAAAAGGGACAAGTTTGTCAATGTTGATAACAATTACGCTGATCCTCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAACCCCAGCATGCGTGCAATATTGATTGACTGGCTCGTGGAGGTGGCTGAAGAGTATAGACTAGTACCTGATACGTTGTATTTGACGGTAAACTACATTGACCGGTATCTTTCAGGAAATGTGATGAACAGACAAAGGTTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATTACTGATAACACGTACTTCAAAGAAGAGGTTTTGCAGATGGAATCCGATGTTTTAAATTTTCTCAAGTTCGAAATGACAGCCCCAACAGTAAAATGTTTCATAAGAAGATTTGTACGTGCAGCTCAAGGAGTGGACGAGGTCCCTTCGCTGCAACTAGAGTGCTTGACAAACTATATTGCCGAATTGTCTCTGTTGGAGTACAGCATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCTGCAATTTTTCTGGCCAAATTTATACTTTTCCCTTCAACGAAACCATGGAATTCCACGTTGCAGCATTACACACTCTACCAGCCTTCCGATCTGTGTGTTTGCGTGAAGGATCTCCACCGCCTTTGTGGTAACAGCTCTAACTCTAATTTGCCTGCAATCAAGGAGAAGTATAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTACTGCCCTCCTTCAATACCTCCAGAATTTTTCCTGAGTTGA 1470 0.451 MSTQNRRSSFSSSTTSSLAKRHASTASSSSTSSLAVPSNIPKKRPPLSNLTNTVAHRNSSSSVPCAAKLAKTKKEVVPPSSGNKRPTLVNVKPANAVVFPKANSLPVRNEAPPPPPPPPLVVTVTVPPPVLDVSPSKSDAMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSNLNISDSTESGNICSRDILVELEKRDKFVNVDNNYADPQLCASFACDIYKHLRASEAKKRPSTDFMERIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESDVLNFLKFEMTAPTVKCFIRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSTKPWNSTLQHYTLYQPSDLCVCVKDLHRLCGNSSNSNLPAIKEKYSQHKYKYVAKKYCPPSIPPEFFLS* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01460 489 CDD CYCLIN_AtCycA-like_rpt2 356 470 - -
Lapu9g01460 489 PANTHER CYCLINS 175 467 IPR039361 -
Lapu9g01460 489 FunFam Mitotic cyclin 6 241 341 - -
Lapu9g01460 489 FunFam Cyclin A1 343 475 - -
Lapu9g01460 489 Gene3D - 227 475 - -
Lapu9g01460 489 MobiDBLite consensus disorder prediction 1 66 - -
Lapu9g01460 489 SMART cyclin_7 263 347 IPR013763 -
Lapu9g01460 489 SMART cyclin_7 360 448 IPR013763 -
Lapu9g01460 489 PIRSF Cyclin_A_B_D_E 1 484 IPR046965 GO:0016538|GO:0044772
Lapu9g01460 489 SMART Cyclin_C_2 356 479 IPR004367 -
Lapu9g01460 489 Pfam Cyclin, C-terminal domain 356 475 IPR004367 -
Lapu9g01460 489 SUPERFAMILY Cyclin-like 356 481 IPR036915 -
Lapu9g01460 489 Pfam Cyclin, N-terminal domain 227 353 IPR006671 -
Lapu9g01460 489 SUPERFAMILY Cyclin-like 216 353 IPR036915 -
Lapu9g01460 489 Gene3D - 241 354 - -
Lapu9g01460 489 ProSitePatterns Cyclins signature. 258 289 IPR006671 -
Lapu9g01460 489 MobiDBLite consensus disorder prediction 1 89 - -
Lapu9g01460 489 CDD CYCLIN_AtCycA_like_rpt1 217 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01460 Lapu-Chr9 28968194 28972218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01460 4 487 Core Cell Cycle Gene Families AT1G44110 62.372 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01460 K06627 - gmx:547781 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01460 9 28968194 28972218 Lapu9g01460 9 28968194 28972218 ECH