Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01440 ATGGGAACCGAGGAGGGAACAAGCTATGCAGATAAGACAGAAAGTGATGAACGAGTCCAGTGTTTGAAAGATGAGGCCATGAATGGTGAGGTGAAAATTAAAGATGAGAATTGTGTTACTGAAGAGGGACAACATTTGAATAGTGAAGCCATGAAGGATAAGGTTGCAATTGCTGATGCAAATGGTGTTGCTTTGGAGGTTAGGGTCTTGAAAAGTGAACCCTTTAGTAATGGGGTGACAATTGGGGATAAAGAGGGCTCTGGCAGAGTGGAATGTTTGCGAACTTATAAAAGGCGTAAGAAGTCAAGTTCAAAAGGCAAAGTTCACGAACAATGCAGAGCAGGCGTGAGAACTGCAAGTCGAATAGCAGATCAGGATGTGAAGAAACCGTGTGATCTAGCTTTAGGCAATACTTCAGATGATTGTTCCCAAGGAAAGTGGGGAAATATTGTACTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGCGGTGTAGAGGGGTGCATAAGGGAAGCACTTAATCCTAAACATAATCATGCTACTGCAGTTATGGAAACCTTTATAATTGACAAAGATGGTCAAGAATGTTCTTCGTCATTTGAGAGGCTTTCTCATAGAACAGGAAAGGAAGCTAATCGACATGCAGATGTCATGTGTAATGGATGTGCCAGTGAATTGCCTGACCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCTGTAATATCTTAACCTCAGAAAAATTCAGTTCATTGTGCAAGGCTTTACTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACCTTACCATCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACGATCACCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGTAACGAGATTGTTGCTCTTGCCAAGAGCCTATCAAGCATGTCAACAACTTCCTACTCTGAGCTGGTAGGACTTTCAGCACCAAGCACATTTCAAGATCAGAAGCAACCGTCCTACAACCGAGAATTTGGCCCTCACATGAAACCAAGACAGACGCAAGAATGTGCTATGTACAAAGTCTGTAGTTGCAGCCGCTGTGGAGAGAAGGCAGATGACAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCGGCGGTGAAAGAAATAGTACCCCACAAAAGCTGGTATTGTGCCAAGTGTACTGCTAATGGGATCGGATCTCCACATGAGAATTGTGTACTATGTGAAAGGCTAAATGATGAACAGACCCCAAATGACATAACTGGTGATGAAAGCTTTCATACAATTAAGGAAACAAAAAAGGAATTTGAAGAAAATTCAAATTTAACCTCTGATCGGATTAAAGTTTCTGTAGGTGAGAAAACAACAACCATTTGCAAAATTTGCAGAAATGAAACGGATGGTAAAAGGATAAAAATATGTGGCCATAGGTTTTGCTCCAGTAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAATTAATGTCGTATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCTGTGTTTGCTTCATTGATCGAGATGATGATCAGATTGTTATCTGTGATGGCTGTGATCGTGGATATCACATCTATTGCTTGACACCTCCACAGGCTTCAATACCAAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGGGATACAAGCAATTCACAAGGCTAAAAGGGCTTATGAAAGAAACGTGCCAAGCAGAAAAGGGGAAGATGCTGCTAAGCCAAATGCTAAACTTGAAAAGAAATATAGAAATAAACGAGCAAGAGAATTGGAAAGAGGTGGTGCAATGGACATGCTTTTAACCGCAGCCAATACTCTGAATTTTGAGGAGAAAGAAGCAGCAATCCAACTTGAGTCGCAACAGACAACATGA 1950 0.4154 MGTEEGTSYADKTESDERVQCLKDEAMNGEVKIKDENCVTEEGQHLNSEAMKDKVAIADANGVALEVRVLKSEPFSNGVTIGDKEGSGRVECLRTYKRRKKSSSKGKVHEQCRAGVRTASRIADQDVKKPCDLALGNTSDDCSQGKWGNIVLKHLYQSLGDGNGGVEGCIREALNPKHNHATAVMETFIIDKDGQECSSSFERLSHRTGKEANRHADVMCNGCASELPDHGVTEMCQRVLCNILTSEKFSSLCKALLENFQGMKPESVFDLTIMNSRMKEQAYERSPALFLSDIQQVWRKLQDTGNEIVALAKSLSSMSTTSYSELVGLSAPSTFQDQKQPSYNREFGPHMKPRQTQECAMYKVCSCSRCGEKADDKDCLVCDSCEEIYHVSCIEPAVKEIVPHKSWYCAKCTANGIGSPHENCVLCERLNDEQTPNDITGDESFHTIKETKKEFEENSNLTSDRIKVSVGEKTTTICKICRNETDGKRIKICGHRFCSSKYYHVRCLTKKQLMSYGHCWYCPSCLCCVCFIDRDDDQIVICDGCDRGYHIYCLTPPQASIPSGKWFCRLCDAGIQAIHKAKRAYERNVPSRKGEDAAKPNAKLEKKYRNKRARELERGGAMDMLLTAANTLNFEEKEAAIQLESQQTT* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01440 649 Gene3D - 269 416 - -
Lapu9g01440 649 ProSiteProfiles Zinc finger PHD-type profile. 364 415 IPR019787 -
Lapu9g01440 649 SUPERFAMILY FYVE/PHD zinc finger 526 574 IPR011011 -
Lapu9g01440 649 SMART PHD_3 527 572 IPR001965 -
Lapu9g01440 649 SMART PHD_3 477 526 IPR001965 -
Lapu9g01440 649 SMART PHD_3 366 413 IPR001965 -
Lapu9g01440 649 FunFam PHD finger protein EHD3 isoform A 254 416 - -
Lapu9g01440 649 ProSiteProfiles Zinc finger RING-type profile. 478 525 IPR001841 -
Lapu9g01440 649 SUPERFAMILY FYVE/PHD zinc finger 358 413 IPR011011 -
Lapu9g01440 649 PANTHER OS02G0192300 PROTEIN 281 439 - -
Lapu9g01440 649 ProSiteProfiles Zinc finger PHD-type profile. 524 574 IPR019787 -
Lapu9g01440 649 SUPERFAMILY FYVE/PHD zinc finger 472 526 IPR011011 -
Lapu9g01440 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 523 IPR013083 -
Lapu9g01440 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 524 585 IPR013083 -
Lapu9g01440 649 Pfam PHD-finger 367 414 IPR019787 -
Lapu9g01440 649 Pfam PHD-finger 527 572 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01440 Lapu-Chr9 28742990 28749884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01440 526 594 C2H2 Transcription Factor Family AT3G01460 43.478 9.49e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu9g01440 PHD 2.1e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01440 - - gmx:100795906 1001.5