LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu9g01434	ATGGGTGTCCATTTAAAGCAGCTGCTACTCGTTATACTCCTGACTGCAGCAGCAACTAAATCTCAGCCAAAGCCAAACTGTCCGACAAAGTGTGGTAACGTTACCATTCCCTTTCCCTTTGGCCTGACAGAGGACTGTTCTCTCAACACCTCATTTCTCATCACTTGCAACCAAACCCTTTCACCACCCATTCCATTCTTGAATAATGATAGTGAGGTTCGTGTGCTGAACATCTCACTCGACGGCCAACTGCACATTTCATTGCCAGTTTCCAGATATTGCGTCGATAACAAGACTGGTGAACCATTAAACAGAAGTGGGCCCTTCGTGTTCCAGCTCACACCTTTTCACCTATCATCCAAGCAAAACAAGTTAACTGTATTGGGCGCTGACACAGCTGGAGTAGTGTATGATGCAGATTCAAGATACCGAAGACTGTACGCTACTGTTGCATGCGTGTCTTTGTACATTGGCAGTGACAAGGAGCGAACACATGACGAGTCATGCTCCGGCACTTTTTGTTGCGAGACTCCAATTCAACGAAGGCTATCGGAATTCATCTATTTTTCTTCTGCAAATATCTTCAACGATAACTTCACCAAGCCATTTCAGTATTACCCATGTGGTTATGCATTTCTGGTTAAGGAGGGAGCCTACAAGTTCTCCATGACTGACCTCGTCAATTTTAACAGCAGCAACACGTTTCCTGTGGTTGTGGATTGGGCAGTGGGGAATACATGCCCAGGTACTGAGAAGAATGGTTCAAGTTACGCGTGTAAGTCAAAGTACAGTGAATGTCACAATGCAGAGGTGGGACCTGGTTACCATTGTAAATGTTCCAGTGGTTTTGGGGGAAACCCTTACCTACTTGATGGTTGTCAAGACGTTGATGAATGCGCTGAGGGATCCCACCTCTGTTTAAAGGGGAGATCAGCATGCAACAACAGTCCAACAGGGAGCTACAGTTGTTTTTGTCCAAAGGGATACGAAGGAGATGGAAAAATTAATGGAACCGGATGTCTTGTCACTAGAAACCGCAAAATCATAATTGCTTTGAGTGTGAGTGGAAGTATATTGGCACTTGTCGGGGGAACCCTTTACCTGTATTGTGCATTAAGGAAAAGAAAACTCAACAAACTTAAAGAACATTTTTTTCTACTAAACGGTGGCCTGTTATTACAACAACAGATAGGCAGGTACAGTGGATCATCAGAAATGACAAAAATCTTTACTGTGGAAGAACTAAAAGAGGCCACCCACAATTTCAATGAAGAGATGGTCTTAGGCGAAGGTGGGCAGGGAACAGTTTACAAAGGAATATTACCTGACAACAGAGTTGTAGCAATAAAAATGTCCAGAATTAGTAACCCAAACCAAATTGAGCATTTCATCAATGAGCATCTTCACGACCAAGGCCAATCTCTAAGACTTACATGGAAAAGAAGATTACAAATAGCAACAGAAACTGCAGGGGCCCTGGCATACTTGCATTCTGCTACCTATGCACCAATCGTACATAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCAAGGATTATTCCTCTTGATCGAACTCAGTTAACCACTTTGGTGTTGGGGACACTAGGGTATCTTGACCCAGAATACTTCCACTCAAGCCAGCTAACAGAGAAAAGTGATGTCTATAGTTTTGGAGTTGTCCTAGTCGAACTACTAACAGGAAAGAAGGCACTCTGTTTTGAAAGGCCAGAGGCTCATAGAAACCTGGCGGTTCATTTCCATTCTTCAATGAATGAGGGTCGGTTACTTAACATTGTAGACAGCCGCATAATAGATGAGGCAAATGTTGAGCAACTAATGGATGTTGCCAATATTGCCAGCCATTGTTTAAGGTTGAAGGGTGAGGAAAGGCCCACCATGAGAGAAGTGGCAACAGAACTTGAAGCAATAAACATTGTGGAGAAGCACCAATGGGAAAGAGTCAATTTGTCGTCAGAGGAAACTGAAAATTTTCTCAAAGCAACAGCATCATCATCTTCTTTTATTGTAGATGGTGTTAACAGAAGAAGCATTCATTCTGGCTCTGATATTTCAAACCGAATTTCCTTTTCCTTAACTAGTGGAAGATGA	2148	0.4274	MGVHLKQLLLVILLTAAATKSQPKPNCPTKCGNVTIPFPFGLTEDCSLNTSFLITCNQTLSPPIPFLNNDSEVRVLNISLDGQLHISLPVSRYCVDNKTGEPLNRSGPFVFQLTPFHLSSKQNKLTVLGADTAGVVYDADSRYRRLYATVACVSLYIGSDKERTHDESCSGTFCCETPIQRRLSEFIYFSSANIFNDNFTKPFQYYPCGYAFLVKEGAYKFSMTDLVNFNSSNTFPVVVDWAVGNTCPGTEKNGSSYACKSKYSECHNAEVGPGYHCKCSSGFGGNPYLLDGCQDVDECAEGSHLCLKGRSACNNSPTGSYSCFCPKGYEGDGKINGTGCLVTRNRKIIIALSVSGSILALVGGTLYLYCALRKRKLNKLKEHFFLLNGGLLLQQQIGRYSGSSEMTKIFTVEELKEATHNFNEEMVLGEGGQGTVYKGILPDNRVVAIKMSRISNPNQIEHFINEHLHDQGQSLRLTWKRRLQIATETAGALAYLHSATYAPIVHRDVKTSNILLDHNLTAKVSDFGASRIIPLDRTQLTTLVLGTLGYLDPEYFHSSQLTEKSDVYSFGVVLVELLTGKKALCFERPEAHRNLAVHFHSSMNEGRLLNIVDSRIIDEANVEQLMDVANIASHCLRLKGEERPTMREVATELEAINIVEKHQWERVNLSSEETENFLKATASSSSFIVDGVNRRSIHSGSDISNRISFSLTSGR*	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu9g01434	715	SUPERFAMILY	EGF/Laminin	293	333	-	-
	Lapu9g01434	715	Gene3D	Laminin	246	340	-	-
	Lapu9g01434	715	FunFam	Fibrillin 2	290	336	-	-
	Lapu9g01434	715	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	504	516	IPR008271	GO:0004672\|GO:0006468
	Lapu9g01434	715	SMART	egf_5	298	341	IPR000742	-
	Lapu9g01434	715	SMART	egf_5	258	294	IPR000742	-
	Lapu9g01434	715	SUPERFAMILY	Protein kinase-like (PK-like)	400	661	IPR011009	-
	Lapu9g01434	715	Gene3D	Transferase(Phosphotransferase) domain 1	467	679	-	-
	Lapu9g01434	715	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	466	661	IPR045274	GO:0007166
	Lapu9g01434	715	ProSiteProfiles	Protein kinase domain profile.	381	665	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g01434	715	ProSiteProfiles	EGF-like domain profile.	295	332	IPR000742	-
	Lapu9g01434	715	Pfam	Protein kinase domain	477	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g01434	715	Pfam	Calcium-binding EGF domain	295	333	IPR001881	GO:0005509
	Lapu9g01434	715	Pfam	Wall-associated receptor kinase galacturonan-binding	27	84	IPR025287	GO:0030247
	Lapu9g01434	715	CDD	EGF_CA	295	332	-	-
	Lapu9g01434	715	Gene3D	Phosphorylase Kinase; domain 1	395	466	-	-
	Lapu9g01434	715	FunFam	Wall-associated receptor kinase 2	461	676	-	-
	Lapu9g01434	715	SMART	serkin_6	422	656	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu9g01434	715	SMART	egfca_6	295	341	IPR001881	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu9g01434	Lapu-Chr9	28635633	28639056	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu9g01434	1	664	Receptor kinase-like Gene Family	AT1G21230	40.586	5.56e-161	480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Lapu9g01434		Pkinase	2.4e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu9g01434	-		-	vum:124835050	1064.29