Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01424 ATGGATAGCCCTCCTACTCCATCTTACGTCGTGGTTGCATGCGATGCGACAAGAGACCGCACTGAGCACGAGATCAAACTCGTTGTTGATCATGTTCGGTCCAGGGGTGTCTTTCTCTCTTATGGTGACAAGCTGCTTGTGCTTTGTGTATTGCACAAAGTGTCTCACCCTATGGGGTACCAGACGTTAGCATGTCCCGAGTCGTTTTCTGGAACCAACTTCCGTGCCATGGAGGAAGAAGTCAAAAAGAAAGTTGATGCATATGCTAGAGAGCTTTTATCAAGTTATGAAGATTTTGAAAGTGAAGGGGTTACTATTGAAATTAAAGTCACCGCGGGATTTCCAATCAAACAGGTTGTTTTACAGGAAATTACAAACTATGATGTATCTTGGATAATACTTGACAGACATCTTCGGCGCGACCTGAGATACCACCTTAACAAGTTGCCATGTAAGGTTGCATTGGTTAAAGATGACTTATCTCTGGATATTTGGAAATCTCATTATACAGACACAAAGGTCACAGCAACAAAGTTTGTATTTTCTTTGTCAAAGTTTGTGTCGCTATCAGATTGTCATAGTATTGAAGACATTGAGCACTCTATTATCTCTTGCAAAAGCTATCCCCATTCTATAGTTTCTTCTGATACCTCTAGTACGATTAGAAGCTATACGAGGCAGTCAAGTGCTAACAGGTCGCGAGATTACAATTCCATATCAGAATTTGGATCCTCTTCTAAGCAAGAAAGATCAGGCATAAGCATTAAAGGAGAATATAGGTATCTCATTAGTTCTCAGATTGACCAAAAGCAAAATCAAAGTTGCTTTCTGCCAAAATATTCAGATGCACCGCTTCTTTGTACTGGCTGTGGAACAAGAACTGAGTTATCTATCAAAGAGTCAATGAAGTTCAGCTACTCCGACATACAACTTGCAACAAATGATTTTTCAAAGGATAACTTATTAGGTGAAGGTGGCTATGGTCACGTATATAAGGGCGTGCTTAAAGATGGACAGCAAATTGCCGCAAAGGTAAGGAAAGAAGAAAGTTCACAAGGATTTTCTGAATTTCATTCTGAGGTGTACGTCTTAAGTTTTGCTCGACACAAGAATATAGTGATGCTGTTGGGTTATTGTTGCAAAGAAAAGAAAAACATCCTGATTTATGAATATATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATAATGTAGCTGTTCTGGAGTGGCACCAAAGGTATGCTATTGCCATTGGGATTGCAAAGGGATTGCGTTTTCTACACGAGGAATGTCGTGGTGGTCCTATCATTCATCGGGACATGCGACCAAGCAATGTACTTCTCACCCATGATATTGTTCCCATGCTAGGTGACTTTGGCCTTGCTAAATGGAAGACTGGTGATGAAACTCCACAAACAAGGATAATGGGCACATTAGGATACCTTGCTCCCGAGTATGCCGAAGACGGTATTGTTTCTGAGGGAACAGATGTGTATTCTTATGGCATTACCCTGTTACAATTGATATCAGGACGCCAGGTTGGCAATTCCAACAATCCAGAACAACCACAATCTCTGCGACAATGGGCCGAGCCAATGATAGAGAAGTTAGCCTTACATGAACTGATAGATACTCGTCTAGGGGAATCATATGACACGTATGAACTGTACCTCATGGCTAAAGCAGCATACTTCTGTGTGCAAAGGAAGCCTGAGATGCGTCCATCAATGGGAGAGGTCGTGCGACTTCTTGAGGGAGAAAGTAGCCACTTCCACTCCTTGGAAGATCAATTTGTACCTAATTACAATGATTAA 1818 0.4131 MDSPPTPSYVVVACDATRDRTEHEIKLVVDHVRSRGVFLSYGDKLLVLCVLHKVSHPMGYQTLACPESFSGTNFRAMEEEVKKKVDAYARELLSSYEDFESEGVTIEIKVTAGFPIKQVVLQEITNYDVSWIILDRHLRRDLRYHLNKLPCKVALVKDDLSLDIWKSHYTDTKVTATKFVFSLSKFVSLSDCHSIEDIEHSIISCKSYPHSIVSSDTSSTIRSYTRQSSANRSRDYNSISEFGSSSKQERSGISIKGEYRYLISSQIDQKQNQSCFLPKYSDAPLLCTGCGTRTELSIKESMKFSYSDIQLATNDFSKDNLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKEKKNILIYEYICNKSLHWHLFENNVAVLEWHQRYAIAIGIAKGLRFLHEECRGGPIIHRDMRPSNVLLTHDIVPMLGDFGLAKWKTGDETPQTRIMGTLGYLAPEYAEDGIVSEGTDVYSYGITLLQLISGRQVGNSNNPEQPQSLRQWAEPMIEKLALHELIDTRLGESYDTYELYLMAKAAYFCVQRKPEMRPSMGEVVRLLEGESSHFHSLEDQFVPNYND* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01424 605 PANTHER OS01G0253100 PROTEIN 231 588 - -
Lapu9g01424 605 Gene3D HUPs 10 158 IPR014729 -
Lapu9g01424 605 ProSiteProfiles Protein kinase domain profile. 316 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01424 605 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Lapu9g01424 605 Gene3D Phosphorylase Kinase; domain 1 289 391 - -
Lapu9g01424 605 ProSitePatterns Tyrosine protein kinases specific active-site signature. 437 449 IPR008266 GO:0004672|GO:0006468
Lapu9g01424 605 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 39 158 - -
Lapu9g01424 605 Pfam Protein kinase domain 317 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g01424 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 392 596 - -
Lapu9g01424 605 Gene3D Transferase(Phosphotransferase) domain 1 393 599 - -
Lapu9g01424 605 SUPERFAMILY Protein kinase-like (PK-like) 300 585 IPR011009 -
Lapu9g01424 605 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 288 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01424 Lapu-Chr9 28551383 28555240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01424 304 586 Trihelix Transcription Factor Family AT5G38560 44.138 3.95e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lapu9g01424 Pkinase 7.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01424 - - vun:114163670 1127.85